Factsheet for PGSC0003DMT400080588

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g043110.1.1	Tomato	plastid	98.7	98.36
PGSC0003DMT400080580	Potato	cytosol	93.64	91.38
VIT_09s0002g04680.t01	Wine grape	cytosol	82.1	82.19
KRH09848	Soybean	endoplasmic reticulum, nucleus	82.1	80.76
KRH23474	Soybean	endoplasmic reticulum	81.86	80.53
Bra039679.1-P	Field mustard	cytosol	75.97	78.85
CDX76065	Canola	cytosol	75.27	78.5
AT1G79930.1	Thale cress	cytosol	76.68	78.34
Bra014713.1-P	Field mustard	cytosol	75.03	78.26
GSMUA_Achr7P09800_001	Banana	cytosol	76.68	76.41
KRH47052	Soybean	cytosol, endoplasmic reticulum	75.97	75.26
KRH44373	Soybean	cytosol, endoplasmic reticulum, nucleus	75.5	75.23
CDY24089	Canola	endoplasmic reticulum, extracellular	75.97	75.17
GSMUA_Achr5P06230_001	Banana	cytosol	75.27	75.09
GSMUA_Achr2P15830_001	Banana	cytosol	74.2	74.38
GSMUA_Achr2P19660_001	Banana	cytosol	73.97	73.97
AT1G79920.2	Thale cress	cytosol	63.84	73.64
Os01t0180800-01	Rice	plasma membrane	72.67	73.02
EES17815	Sorghum	cytosol	72.08	72.68
Zm00001d037700_P002	Maize	cytosol	71.26	71.94
EES19148	Sorghum	cytosol	72.08	71.92
Zm00001d009948_P004	Maize	cytosol	70.44	71.79
CDY43337	Canola	cytosol	75.03	71.65
HORVU1Hr1G026840.3	Barley	cytosol	70.44	71.62
TraesCS1B01G139600.1	Wheat	cytosol, golgi	71.02	71.62
TraesCS1D01G121200.3	Wheat	cytosol, golgi, unclear	70.91	71.5
TraesCS1A01G120200.1	Wheat	cytosol	70.79	71.46
TraesCS1A01G120100.4	Wheat	cytosol	70.08	71.26
TraesCS1D01G121000.1	Wheat	cytosol	70.08	71.26
TraesCS1B01G139500.1	Wheat	cytosol	69.73	71.15
HORVU1Hr1G027420.5	Barley	cytosol	69.49	70.83
Zm00001d037717_P002	Maize	plastid	69.02	69.51
Zm00001d009950_P002	Maize	cytosol	70.08	69.27
Zm00001d025053_P001	Maize	cytosol	19.32	68.62
Zm00001d048458_P006	Maize	cytosol	19.2	68.2
Os05t0181000-01	Rice	plasma membrane	68.08	67.76
CDY45119	Canola	extracellular	75.38	66.95
CDY32364	Canola	cytosol	20.02	58.62
CDY32367	Canola	cytosol, mitochondrion, plastid	19.79	57.34
CDY67465	Canola	cytosol	18.14	55.2
TraesCS3B01G298400.1	Wheat	cytosol	23.91	32.27
PGSC0003DMT400041135	Potato	extracellular	24.26	23.15
PGSC0003DMT400050462	Potato	cytosol	13.43	22.49
PGSC0003DMT400077358	Potato	cytosol	14.02	20.77

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102601134	MapMan:19.1.1.2.1.1	MapMan:19.1.5.3	Gene3D:2.60.34.10	Gene3D:3.30.30.30
Gene3D:3.30.420.40	Gene3D:3.90.640.10	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048
UniProt:M1D3Q1	PFAM:PF00012	EnsemblPlantsGene:PGSC0003DMG402031379	PGSC:PGSC0003DMG402031379	EnsemblPlants:PGSC0003DMT400080588	PRINTS:PR00301
PANTHER:PTHR19375	PANTHER:PTHR19375:SF322	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI000296A0C1
RefSeq:XP_006346577.1	RefSeq:XP_006346578.1	RefSeq:XP_015163846.1	SEG:seg	:	:

Description

Heat shock 70 kDa protein [Source:PGSC_GENE;Acc:PGSC0003DMG402031379]

Coordinates

chr12:-:50378359..50384146

Molecular Weight (calculated)

93572.3 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.396

Length

849 amino acids

Sequence
(BLAST)

001: MSVVGFDFGN ERGVVAVARQ RGIDVVLNDE SKRETPAIVC FGEKQRFLGT AGAASSMMNP KNTISQIKRL IGRQFSDPEL QRDIKTLPFL VTEGPDGYPL
101: IHARYLGEVR TFTPTQVLGM VFSDLKTIAE KNLNAVVVDC CIGIPIYFTD LQRRAVMDAA TIAGLHPLHL IHETTATALA YGIYKTDLPE NDPVNVAFVD
201: VGHASLQVCI AGFKKGELKI LAHSFDRNLG GRDFDEAIFQ HFAAKFKEEY KIDVYQNARA CIRLRAACEK LKKVLSANPE APLNIECLMD EKDVRGFLKR
301: DEFEQISIPI LERVKKPLEK ALAEAGLTTE NIHAVEVIGS SSRVPAIMRI LTEFFGKEPR RTMNASECVA KGAALQCAIL SPTFKVREFK VNESFPFPIA
401: LSWKGPAPDA QNGALENHQS TIVFPKGNPI PSVKALTFYR SGTFTIDVQY ADVSELQAPA KISTYTIGPF QSTKGERAKL KVKVRLNLHG IVSVESATLL
501: EEEEVEVPVV KETAKEPAKM ETDEASVDAA PSTTSESDVN MQDAKGAAAA SGAENGVPES GDKPVQMETD AKVEAPKKKV KKTSVPVTEI VYGAMAAADV
601: QKAVEKEFEM ALQDRVMEET KDKKNAVESY VYDMRNKLSD KYQEFVTDSE REQFMAVLQE VEDWLYEDGE DETKGVYIAK LEELKKQGDP IEQRYKEYTE
701: RGPVIDQFIY CINSYREAAV STDPKFDHID LADKQKVLNE CVEAEAWFRE KKQQQDALPK YANPVLLSAD VRKKAEALDR VCRPIMTKPK PATPETPPPQ
801: SPQGGEQQPP SAESPNAGNA TEGASAGSEV PPAAEPMETD KSETAPSAS

Best Arabidopsis Sequence Match ( AT1G79930.1 )
(BLAST)

001: MSVVGFDFGN ENCLVAVARQ RGIDVVLNDE SNRETPAIVC FGDKQRFIGT AGAASTMMNP KNSISQIKRL IGRQFSDPEL QRDIKSLPFS VTEGPDGYPL
101: IHANYLGEKR AFTPTQVMGM MLSNLKGIAE KNLNTAVVDC CIGIPVYFTD LQRRAVLDAA TIAGLHPLRL IHETTATALA YGIYKTDLPE SDQLNVAFID
201: IGHASMQVCI AGFKKGQLKI LSHAFDRSLG GRDFDEVLFN HFAAKFKDEY KIDVSQNAKA SLRLRATCEK LKKVLSANPL APLNIECLMD EKDVRGVIKR
301: EEFEEISIPI LERVKRPLEK ALSDAGLTVE DVHMVEVIGS GSRVPAMIKI LTEFFGKEPR RTMNASECVS RGCALQCAIL SPTFKVREFQ VHESFPFSIS
401: LAWKGAASEA QNGGAENQQS TIVFPKGNPI PSVKALTFYR SGTFSVDVQY SDVNDLQAPP KISTYTIGPF QSSKGERAKL KVKVRLNLHG IVSVESATLL
501: EEEEVEVPVT KEHSEETTKM DSDKASAEAA PASGDCDVNM QDAKDTSDAT GTDNGVPESA EKPVQMETDS KAEAPKKKVK KTNVPLSELV YGALKTVEVE
601: KAVEKEFEMA LQDRVMEETK DRKNAVESYV YDMRNKLSDK YQEYITDSER EAFLANLQEV EDWLYEDGED ETKGVYVAKL EELKKVGDPV EVRYKESLER
701: GSVIDQLGYC INSYREAAMS TDPKFDHIEL AEKQKVLNEC VEAEAWLRGK QQQQDTLPKY ATPALLSADV KSKAEALDKF CRPIMTKPKP VAKAEAPQAK
801: GGEQADEGKS EPEQPASAEP METENPAEGS T

Arabidopsis Description

HSP70-14Heat shock 70 kDa protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.