Factsheet for TraesCS6A01G276700.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, unclear

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G304200.1	Wheat	golgi	98.76	98.76
TraesCS6D01G257000.1	Wheat	endoplasmic reticulum	98.19	98.75
HORVU2Hr1G036440.8	Barley	cytosol	11.4	98.06
HORVU6Hr1G001950.1	Barley	cytosol	20.32	89.55
HORVU1Hr1G077070.2	Barley	cytosol	24.27	89.21
HORVU1Hr1G040940.1	Barley	cytosol	11.74	83.87
Zm00001d051607_P004	Maize	endoplasmic reticulum	82.73	81.53
KXG30896	Sorghum	endoplasmic reticulum	77.88	74.35
Zm00001d017809_P002	Maize	plasma membrane	77.31	73.89
Zm00001d051609_P004	Maize	cytosol	38.71	73.45
GSMUA_Achr10P...	Banana	endoplasmic reticulum	67.72	66.96
GSMUA_Achr6P09420_001	Banana	endoplasmic reticulum	66.82	66.29
VIT_04s0008g04410.t01	Wine grape	endoplasmic reticulum	65.58	64.92
CDY32270	Canola	cytosol, mitochondrion, plastid	57.11	64.21
CDY40516	Canola	cytosol	60.27	63.95
Solyc07g043560.2.1	Tomato	plastid	64.22	63.93
CDX90500	Canola	endoplasmic reticulum	62.53	63.75
PGSC0003DMT400041135	Potato	extracellular	64.0	63.71
Bra012696.1-P	Field mustard	endoplasmic reticulum	62.42	63.64
CDY60712	Canola	endoplasmic reticulum	61.96	63.18
AT4G16660.2	Thale cress	endoplasmic reticulum, mitochondrion	63.32	62.96
VIT_09s0096g00090.t01	Wine grape	endoplasmic reticulum, plastid	65.58	62.21
Bra038496.1-P	Field mustard	endoplasmic reticulum	59.37	62.17
KRH17619	Soybean	endoplasmic reticulum	62.42	62.07
KRH51336	Soybean	cytosol	38.26	61.52
KRG90078	Soybean	endoplasmic reticulum	61.85	61.37
VIT_04s0043g00710.t01	Wine grape	cytosol	45.71	54.73
TraesCS7A01G457100.1	Wheat	cytosol	23.14	27.82
TraesCS6A01G342400.1	Wheat	cytosol	14.0	25.25
TraesCS2A01G107900.1	Wheat	vacuole	12.08	24.77
TraesCS1A01G120200.1	Wheat	cytosol	23.14	24.38
TraesCS1A01G120100.4	Wheat	cytosol	22.69	24.07
TraesCS5A01G511700.1	Wheat	endoplasmic reticulum, golgi	9.82	19.25
TraesCS5A01G511800.1	Wheat	endoplasmic reticulum	7.45	18.28
TraesCS4A01G066100.1	Wheat	cytosol	11.29	17.12

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.1.2.5	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	ncoils:Coil
InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF320	SUPFAM:SSF100934
SUPFAM:SSF53067	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6A01G276700	EnsemblPlants:TraesCS6A01G276700.1	TIGR:cd10230
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:503761514..503767646

Molecular Weight (calculated)

97628.4 Da

IEP (calculated)

5.362

GRAVY (calculated)

-0.433

Length

886 amino acids

Sequence
(BLAST)

001: MAPRLLLLAL VAAAVAVLPA SAAVASIDLG SEWLKVAAVH LAPGRAPIAV AINEMSKRKS PALAALADGN RLAGEEAAGI TARHPAKVFS RMRDLLAKPF
101: PYVRALADSL FLPYDLVQDA RGAAAVRADD GQVYTVEEIV AMVLHYASGI ADAHVGLPVR DAVVAVPPYF GQAERRALTQ AAQLAGFNVL ALVNEHAGAA
201: LQYGIDKDFS NESRHVIFYD MGSGSTYAAL VYYSSYSAKE FGKTVSVNQF QVKDVRWNSK LGGLEMEMRL VNYFADQFNK QLGNGDDIRQ SPKAMAKLKK
301: QVKRTKEILS ANTAAPISVE SLYNDIDFRS TITREKFEEL CADLWEQALT PIKDVLTHSG MKIGDIYAVE LIGGATRVPK LQAKLQEFLG RSELDKHLDA
401: DEAIVLGASL HAANLSDGIK LNRKLGMIDG STYGFVFEID GPDYVKDEST DQVLVPRMKK MPIKLFRSIR HTKDFDVSLS YDKASELPPG VSSHKFAEYA
501: ISGLAETSEK YGSRNLSAPI KANLHFSLSR SGIISLDRAE AVIEITEWVE VPKKNVTLET NTTDETLSAE SGTTDSTTDS KENSSSGSDA DNTSTTNDET
601: NVQDTITEKV LKKRTFRVPL KVTEKTAGPA STLSKELYSE AKSRLDVLNK KDAERRRTAE LKNNLESYIY SMKEKLEEST DMLAVSTEQE RESFTEKLSE
701: VQDWLYMDGE EAQANEFQER LDQLKAMGDP ILFRMSELKA RPAACGSARL YLTELQKIVK NWETSKPWLP KKRVDEVVSE ADKLKAWLEE KETLQKSTPA
801: HSSPAFTSEE VYQKVLALQN KVSSVNRIPK PKPKVEKKPA VKEEANKEKT DSSESASSES ESTEKPSESD APEKNNDSEP ESHDEL

Best Arabidopsis Sequence Match ( AT4G16660.1 )
(BLAST)

001: MGKIFSWLVV LLSLISLVPV PSESAVLSVD LGSEWVKVAV VNLKRGQSPI SVAINEMSKR KSPALVAFQS GDRLLGEEAA GITARYPNKV YSQLRDMVGK
101: PFKHVKDFID SVYLPFDIVE DSRGAVGIKI DDGSTVYSVE ELLAMILGYA SNLAEFHAKI PVKDMVVSVP PYFGQAERRG LIQASQLAGV NVLSLVNEHS
201: GAALQYGIDK DFANGSRHVI FYDMGSSSTY AALVYYSAYS EKEYGKTVSV NQFQVKDVRW DLGLGGQSME MRLVEHFADE FNKQLGNGVD VRKFPKAMAK
301: LKKQVKRTKE ILSANTAAPI SVESLHDDRD FRSTITREKF EELCKDLWER SLTPLKDVLK HSGLKIDDIS AVELIGGATR VPKLQSTIQE FIGKQQLDKH
401: LDADEAIVLG SALHAANLSD GIKLKRRLGI VDGSPYGFLV ELEGPNVKKD ESTKQQLVPR MKKLPSKMFR SFVLDKDFDV SLAYESEGIL PPGTTSPVFA
501: QYSVSGLADA SEKYSSRNLS APIKANLHFS LSRSGILSLD RGDAVIEITE WVDVPKKNVT IDSNTTTSTG NATDENSQEN KEDLQTDAEN STASNTTAEE
601: PAVASLGTEK KLKKRTFRIP LKVVEKTVGP GAPFSKESLA EAKIKLEALD KKDRERRRTA ELKNNLESYI YATKEKLETP EFEKISTQEE RKAFVEKLDE
701: VQDWLYMDGE DANATEFEKR LDSLKAIGSP ISFRSEELTA RPVAIEYARK YLTELKEIIK EWETNKTWLP KEKIDEVSKE AEKVKSWLDK NVAEQEKTSL
801: WSKPVFTSTE VYAKVFTLQD KVTKVNKIPK PKPKIEKVTK TENTTKEEEQ SKSSDEAAKE EESHDEL

Arabidopsis Description

heat shock protein 70 (Hsp 70) family protein [Source:TAIR;Acc:AT4G16660]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.