Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G084200.1 | Barley | extracellular, golgi | 31.86 | 89.84 |
| TraesCS4B01G342600.1 | Wheat | endoplasmic reticulum | 90.58 | 78.61 |
| TraesCS4D01G338600.1 | Wheat | endoplasmic reticulum, golgi | 90.03 | 71.27 |
| TraesCS5A01G511700.1 | Wheat | endoplasmic reticulum, golgi | 73.41 | 58.63 |
| Os05t0591400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion | 49.58 | 40.96 |
| TraesCS2A01G107900.1 | Wheat | vacuole | 31.86 | 26.62 |
| TraesCS6A01G342400.1 | Wheat | cytosol | 22.44 | 16.5 |
| TraesCS4A01G066100.1 | Wheat | cytosol | 19.11 | 11.82 |
| TraesCS7A01G457100.1 | Wheat | cytosol | 18.28 | 8.96 |
| TraesCS1A01G120100.4 | Wheat | cytosol | 18.28 | 7.9 |
| TraesCS1A01G120200.1 | Wheat | cytosol | 18.28 | 7.85 |
| TraesCS6A01G276700.1 | Wheat | endoplasmic reticulum, unclear | 18.28 | 7.45 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G511800.1 | EnsemblPlantsGene:TraesCS5A01G511800 | Gene3D:3.30.30.30 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Hsp_70_fam |
| PANTHER:PTHR19375 | PANTHER:PTHR19375:SF201 | PFAM:PF00012 | PRINTS:PR00301 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF53067 | TIGR:cd10170 | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5A:-:675670709..675672105
Molecular Weight (calculated)
39643.6 Da
IEP (calculated)
9.305
GRAVY (calculated)
-0.244
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATRRIYLG VLLLLAVAAS TTSGAAAFGL PRGLRPGHCA SVFRTYDTVS PFMTGNTTAI HLGNTKSCVA GYGGRLDPHT AYQFCIPSWV AFTGNGTLVG
101: EAAMNHAAVS PGTAVSGFKR LLGIRMYNEM VKREAELVPY HFTEQLGRCG IEMEIEEGNV KRFLPEDVAS ILVAELKRMA EAHLGREIRY AVVTVPGHFN
201: GLQHSSLVME AAQWRGGFRT AKLVDEQVAA AAAYRLHEKR GDRKVILVFH LGGRTCHAAK FRFKDGSGHL LDEHHDPYLG GDDFTGRLVD YFVELIKEKH
301: LRDIRGDEGA LRKLRADCER AKKLLSDPEG VLMRSSHEPS SRSGYLRGAH TRSSHEPSSR S
101: EAAMNHAAVS PGTAVSGFKR LLGIRMYNEM VKREAELVPY HFTEQLGRCG IEMEIEEGNV KRFLPEDVAS ILVAELKRMA EAHLGREIRY AVVTVPGHFN
201: GLQHSSLVME AAQWRGGFRT AKLVDEQVAA AAAYRLHEKR GDRKVILVFH LGGRTCHAAK FRFKDGSGHL LDEHHDPYLG GDDFTGRLVD YFVELIKEKH
301: LRDIRGDEGA LRKLRADCER AKKLLSDPEG VLMRSSHEPS SRSGYLRGAH TRSSHEPSSR S
001: MIFIKENTAK MTRNKAIACL VFLTVLDFLM NIGAALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA
101: AKNQAAKNPE RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ
201: RQATKDAGAI AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK
301: DHKALGKLRR ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD
401: GKEPSKGTNP DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE
501: LGKFDLTGIL PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD
601: KEKLAKKISD EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
101: AKNQAAKNPE RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ
201: RQATKDAGAI AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK
301: DHKALGKLRR ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD
401: GKEPSKGTNP DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE
501: LGKFDLTGIL PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD
601: KEKLAKKISD EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
Arabidopsis Description
MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.