CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH07953
KRH09922
KRH11076
KRH21197
KRH22653
KRH23409
KRH26074
KRH26664
KRH27209
KRH31520
KRH42923
KRH42926
KRH45251
KRH55334
KRH59035
KRH59036
KRH65384
KRH69706
KRH76090
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	KRH26074	AT1G03630.1	21798944
AT1G03630.1	KRH27209	AT1G03630.1	21798944
AT1G03630.1	KRH55334	AT1G03630.1	21798944
AT1G03630.1	KRG97393	AT1G27300.1	21798944
AT1G03630.1	KRH31520	AT1G27300.1	21798944
AT1G03630.1	KRH76090	AT1G27300.1	21798944
AT1G03630.1	KRH09922	AT3G16310.1	21798944
AT1G03630.1	KRH23409	AT3G16310.1	21798944
AT1G03630.1	KRH65384	AT3G60600.1	21798944
AT1G03630.1	KRH76164	AT3G60600.1	21798944
AT1G03630.1	KRH11076	AT4G19030.1	21798944
AT1G03630.1	KRH21197	AT4G19030.1	21798944
AT1G03630.1	KRH42923	AT4G19030.1	21798944
AT1G03630.1	KRH42926	AT4G19030.1	21798944
AT1G03630.1	KRH45251	AT4G19030.1	21798944
AT1G03630.1	KRH59035	AT4G19030.1	21798944
AT1G03630.1	KRH59036	AT4G19030.1	21798944
AT1G03630.1	KRH26074	AT4G27440.1	21798944
AT1G03630.1	KRH27209	AT4G27440.1	21798944
AT1G03630.1	KRH55334	AT4G27440.1	21798944
AT1G03630.1	KRH07953	AT5G11980.1	21798944
AT1G03630.1	KRH69706	AT5G11980.1	21798944
AT1G03630.1	KRH22653	AT5G22290.1	21798944
AT1G03630.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26074	Soybean	plastid	81.45	95.03
KRH27209	Soybean	nucleus, plastid	85.71	85.71
VIT_19s0014g03160.t01	Wine grape	plastid	82.46	83.08
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	81.7	82.12
PGSC0003DMT400039734	Potato	plastid	81.7	82.12
Solyc10g006900.2.1	Tomato	plastid	80.95	81.77
PGSC0003DMT400064369	Potato	plastid	81.45	81.66
CDX89249	Canola	plastid	81.2	81.61
Bra026349.1-P	Field mustard	plastid	79.2	81.44
CDY29311	Canola	plastid	80.95	81.36
TraesCS2D01G563700.1	Wheat	cytosol	48.62	80.5
Bra019049.1-P	Field mustard	plastid	79.95	80.15
AT4G27440.1	Thale cress	plastid	80.45	80.05
AT5G54190.1	Thale cress	plastid	80.2	79.01
Bra003004.1-P	Field mustard	plastid	79.2	78.41
GSMUA_Achr11P...	Banana	plastid	77.44	78.03
CDY14325	Canola	plastid	78.95	77.97
GSMUA_Achr3P14270_001	Banana	plastid	75.19	77.52
Zm00001d032576_P001	Maize	plastid	76.19	76.77
EER94008	Sorghum	plastid	75.69	76.65
Zm00001d013937_P001	Maize	plastid	75.94	76.52
CDY51384	Canola	plastid	76.19	76.38
CDY15470	Canola	plastid	76.19	76.38
CDY18175	Canola	plastid	76.44	76.25
Bra033415.1-P	Field mustard	plastid	76.44	76.25
CDX89877	Canola	plastid	76.44	76.25
Bra030540.1-P	Field mustard	plastid	75.94	76.13
AT1G03630.1	Thale cress	plastid	76.19	75.81
CDX98171	Canola	plastid	66.17	75.64
CDY18309	Canola	plastid	65.91	75.36
TraesCS2D01G563600.1	Wheat	golgi, plastid	72.93	75.0
HORVU1Hr1G044680.1	Barley	plastid	74.19	74.94
GSMUA_Achr7P04280_001	Banana	plastid	74.69	74.87
TraesCS2A01G590600.1	Wheat	plastid	72.43	74.48
TraesCS2B01G593000.1	Wheat	plastid	72.43	74.48
TraesCS1B01G186300.1	Wheat	plastid	73.68	74.43
EES11656	Sorghum	plastid	71.68	74.29
Zm00001d001820_P001	Maize	plastid	71.18	73.39
Os10t0496900-02	Rice	plastid	73.68	73.13
Os04t0678700-01	Rice	plastid	70.68	72.87
TraesCS1D01G168700.2	Wheat	plastid	74.44	71.22
TraesCS1A01G171000.1	Wheat	golgi, plastid	73.93	70.74
HORVU2Hr1G006120.3	Barley	plastid	18.3	59.84
HORVU4Hr1G073090.1	Barley	plastid	20.3	57.86
HORVU5Hr1G104070.1	Barley	plastid	18.3	57.03
HORVU2Hr1G119050.2	Barley	mitochondrion	52.38	55.73
HORVU2Hr1G020490.1	Barley	plastid	22.06	54.32
CDX92832	Canola	plastid	80.2	50.24
CDY29840	Canola	plastid	79.45	50.08
KRG91556	Soybean	cytosol	28.32	36.1
KRH38433	Soybean	cytosol	28.32	35.42
KRH08897	Soybean	cytosol, mitochondrion	27.32	34.71
KRH32305	Soybean	plastid	28.07	34.67
KRH59919	Soybean	cytosol, plastid	27.32	34.6
KRH19708	Soybean	nucleus	27.57	34.06
KRH41194	Soybean	cytosol, plastid	26.82	33.97
KRH08894	Soybean	plastid	18.3	33.64
KRH08898	Soybean	cytosol	26.57	33.54
KRH38419	Soybean	plastid	26.82	33.54
KRH67540	Soybean	nucleus	27.07	33.44
KRH38432	Soybean	cytosol	26.07	32.6
KRH38426	Soybean	cytosol	26.57	32.52
KRH38431	Soybean	plastid	26.32	32.51
KRG95813	Soybean	nucleus	26.32	32.51
KRH35271	Soybean	plastid	27.57	31.52
KRH35274	Soybean	cytosol, mitochondrion, plastid	28.32	31.48
KRG91557	Soybean	cytosol	15.79	30.29
KRH54355	Soybean	cytosol	23.31	28.18
KRH08895	Soybean	cytosol	26.32	27.49
KRH41377	Soybean	cytosol	22.31	26.41
KRH63592	Soybean	plastid	23.31	26.12
KRH57109	Soybean	mitochondrion	22.06	26.11
KRH03249	Soybean	mitochondrion, plastid	21.3	25.22
KRH38907	Soybean	endoplasmic reticulum	21.8	23.02
KRH09442	Soybean	cytosol	21.55	22.81
HORVU2Hr1G119090.2	Barley	plastid	22.81	21.51

Protein Annotations

KEGG:00860+1.3.1.33	EntrezGene:100804565	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	UniProt:A0A0R4J3L3	EMBL:ACUP02003962
EnsemblPlantsGene:GLYMA_06G247100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0016630	GO:GO:0055114
EnsemblPlants:KRH55334	ProteinID:KRH55334	ProteinID:KRH55334.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081
PANTHER:PTHR44419	PANTHER:PTHR44419:SF4	InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289
UniParc:UPI00020819F9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:41695478..41698794

Molecular Weight (calculated)

42991.3 Da

IEP (calculated)

9.424

GRAVY (calculated)

-0.175

Length

399 amino acids

Sequence
(BLAST)

001: MALQAASLVS ASFSIAKEGK SGVSLRDTTM FGVSLSDTLK SDFSSPSSTC KREFQQKFGP LRVQSVATTT PGVTKASPEG KKTLRKGSVI ITGASSGLGL
101: ATAKALAETG KWHVIMACRD FLKAERAAKS AGIAKENYTI MHLDLASLDS VRQFVDNFRQ SGRPLDVLVC NAAVYLPTAR EPTYTADGFE LSVGTNHLGH
201: FLLSRLLLDD LNKSDYPSKR LIIVGSITGN TNTLAGNVPP KANLGDMRGL AGGLNGLNTS AMIDGGSFDG AKAYKDSKVC NMLTMQEFHR RYHDETGITF
301: ASLYPGCIAT TGLFREHIPL FRLLFPPFQK YITKGFVSED ESGKRLAQVV SDPSLTKSGV YWSWNAASAS FENQLSQEAS DADKARKVWE ISEKLTGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.