Factsheet for Os10t0496900-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 17189339

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0509600-01
Os02t0643000-01
Os04t0534400-01
Os04t0678700-01
Os05t0520100-00
Os08t0156700-01
Os10t0496900-02
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	Os04t0678700-01	AT1G03630.1	21798944
AT1G03630.1	Os10t0496900-02	AT1G03630.1	21798944
AT1G03630.1	Os02t0509600-01	AT1G27300.1	21798944
AT1G03630.1	Os01t0200500-01	AT3G16310.1	21798944
AT1G03630.1	Os05t0520100-00	AT3G16310.1	21798944
AT1G03630.1	Os02t0643000-01	AT3G60600.1	21798944
AT1G03630.1	Os04t0534400-01	AT3G60600.1	21798944
AT1G03630.1	Os08t0156700-01	AT3G60600.1	21798944
AT1G03630.1	Os04t0678700-01	AT4G27440.1	21798944
AT1G03630.1	Os10t0496900-02	AT4G27440.1	21798944
AT1G03630.1	Os12t0538300-01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94008	Sorghum	plastid	90.3	92.13
Zm00001d032576_P001	Maize	plastid	89.55	90.91
Zm00001d013937_P001	Maize	plastid	89.05	90.4
HORVU1Hr1G044680.1	Barley	plastid	87.31	88.86
TraesCS1B01G186300.1	Wheat	plastid	87.06	88.61
TraesCS1A01G171000.1	Wheat	golgi, plastid	87.81	84.65
TraesCS1D01G168700.2	Wheat	plastid	87.06	83.93
GSMUA_Achr11P...	Banana	plastid	76.87	78.03
CDX89249	Canola	plastid	75.62	76.57
CDY29311	Canola	plastid	75.62	76.57
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	75.37	76.32
PGSC0003DMT400039734	Potato	plastid	75.37	76.32
AT4G27440.1	Thale cress	plastid	76.12	76.31
Bra026349.1-P	Field mustard	plastid	73.63	76.29
VIT_19s0014g03160.t01	Wine grape	plastid	75.12	76.26
Solyc10g006900.2.1	Tomato	plastid	74.63	75.95
CDY18175	Canola	plastid	75.37	75.75
Bra033415.1-P	Field mustard	plastid	75.12	75.5
VIT_12s0059g00270.t01	Wine grape	plastid	74.88	75.44
PGSC0003DMT400064369	Potato	plastid	74.63	75.38
AT1G03630.1	Thale cress	plastid	75.12	75.31
CDX89877	Canola	plastid	74.88	75.25
KRH27209	Soybean	nucleus, plastid	74.63	75.19
CDY15470	Canola	plastid	74.38	75.13
Bra019049.1-P	Field mustard	plastid	74.38	75.13
Bra030540.1-P	Field mustard	plastid	74.38	75.13
CDY51384	Canola	plastid	73.88	74.62
AT5G54190.1	Thale cress	plastid	75.12	74.57
Os04t0678700-01	Rice	plastid	71.39	74.16
Bra003004.1-P	Field mustard	plastid	74.13	73.95
CDY14325	Canola	plastid	74.13	73.76
KRH55334	Soybean	plastid	73.13	73.68
CDX98171	Canola	plastid	62.19	71.63
PGSC0003DMT400047264	Potato	plastid	70.9	71.61
CDY18309	Canola	plastid	61.94	71.35
Solyc07g054210.2.1	Tomato	plastid	70.65	71.18
KRH26074	Soybean	plastid	60.45	71.05
CDX92832	Canola	plastid	74.88	47.25
CDY29840	Canola	plastid	74.38	47.24
Os09t0570300-01	Rice	plasma membrane	25.37	32.28
Os10t0547900-01	Rice	cytosol	23.88	30.57
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	24.13	30.41
Os01t0151700-01	Rice	cytosol	23.13	28.97
Os11t0181800-01	Rice	plasma membrane	23.63	28.88
Os04t0291100-01	Rice	mitochondrion	22.39	28.66
Os03t0115700-01	Rice	mitochondrion	22.14	26.81
Os11t0181700-02	Rice	cytosol, mitochondrion	21.89	26.51
Os06t0129100-01	Rice	mitochondrion	22.64	25.78
Os02t0116500-01	Rice	cytosol	20.9	21.0

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	EntrezGene:4349004	MapMan:7.12.6.5.1	ProteinID:AAL58280.1	ProteinID:AAP54438.1
ProteinID:ABB47824.1	EMBL:AK068143	ProteinID:BAF26869.1	ProteinID:BAT11485.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995
GO:GO:0016491	GO:GO:0016630	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os10g0496900	EnsemblPlants:Os10t0496900-02
PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2	InterPro:Prochl_reduct	UniProt:Q8W3D9
InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniParc:UPI000009CF89	RefSeq:XP_015614945.1	SEG:seg

Description

FADED GREEN LEAFSimilar to Protochlorophyllide reductase B, chloroplastic. (Os10t0496900-01);NADPH: protochlorophyllide oxidoreductase, Chlorophyll synthesis (Os10t0496900-02)

Coordinates

chr10:+:18900290..18904022

Molecular Weight (calculated)

42768.0 Da

IEP (calculated)

9.253

GRAVY (calculated)

-0.107

Length

402 amino acids

Sequence
(BLAST)

001: MALQAATTTS FLPSALSARK EGAVKDSAFL GVRLGDGLKL ETSALGLRTK RVSTSSVAIR AQASAAVSSP TVTPASPSGK QTLRKGTAVI TGASSGLGLA
101: TAKALAETGR WHVVMGCRDF LKASRAAKAA GMEKGSYTIV HLDLASLDSV RQFVANVRRL EMPVDVVVCN AAVYQPTAKQ PSFTADGFEM SVGVNHLGHF
201: LLARELLADL TSSDYPSKRL IIVGSITGNT NTLAGNVPPK ANLGDLRGLA SGLDGVSSSA MIDGGEFDGA KAYKDSKVCN MLTMQEFHRR YHGETGVTFA
301: SLYPGCIATT GLFREHVPLF RLLFPPFQKY ITKGYVSEEE AGKRLAQVVS DPSLTKSGVY WSWNNNSASF ENQLSEEASD PEKAKKVWEL SEKLVGLADH
401: DQ

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.