Factsheet for Solyc07g054210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087650.2.1
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc07g054210.2.1
Solyc10g006900.2.1
Solyc11g068750.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	Solyc07g054210.2.1	AT1G03630.1	21798944
AT1G03630.1	Solyc10g006900.2.1	AT1G03630.1	21798944
AT1G03630.1	Solyc12g013710.1.1	AT1G03630.1	21798944
AT1G03630.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G03630.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT1G03630.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G03630.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G03630.1	Solyc07g054210.2.1	AT4G27440.1	21798944
AT1G03630.1	Solyc10g006900.2.1	AT4G27440.1	21798944
AT1G03630.1	Solyc12g013710.1.1	AT4G27440.1	21798944
AT1G03630.1	Solyc01g087650.2.1	AT5G11980.1	21798944
AT1G03630.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G03630.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047264	Potato	plastid	99.25	99.5
VIT_12s0059g00270.t01	Wine grape	plastid	82.46	82.46
Solyc10g006900.2.1	Tomato	plastid	78.45	79.24
CDX89249	Canola	plastid	78.7	79.09
CDY29311	Canola	plastid	78.7	79.09
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	78.45	78.84
Bra026349.1-P	Field mustard	plastid	76.44	78.61
Bra019049.1-P	Field mustard	plastid	76.94	77.14
CDY51384	Canola	plastid	76.94	77.14
AT5G54190.1	Thale cress	plastid	78.2	77.04
Bra030540.1-P	Field mustard	plastid	76.69	76.88
GSMUA_Achr11P...	Banana	plastid	76.19	76.77
Bra003004.1-P	Field mustard	plastid	77.44	76.67
CDY15470	Canola	plastid	76.44	76.63
AT4G27440.1	Thale cress	plastid	76.94	76.56
CDY14325	Canola	plastid	77.19	76.24
CDY18175	Canola	plastid	76.19	76.0
CDX89877	Canola	plastid	76.19	76.0
Bra033415.1-P	Field mustard	plastid	76.19	76.0
AT1G03630.1	Thale cress	plastid	76.19	75.81
TraesCS2D01G563700.1	Wheat	cytosol	45.61	75.52
CDX98171	Canola	plastid	65.16	74.5
CDY18309	Canola	plastid	64.91	74.21
Zm00001d013937_P001	Maize	plastid	73.18	73.74
Zm00001d032576_P001	Maize	plastid	72.93	73.48
GSMUA_Achr3P14270_001	Banana	plastid	71.18	73.39
EER94008	Sorghum	plastid	72.43	73.35
HORVU1Hr1G044680.1	Barley	plastid	72.43	73.16
TraesCS1B01G186300.1	Wheat	plastid	72.18	72.91
Os04t0678700-01	Rice	plastid	69.92	72.09
GSMUA_Achr7P04280_001	Banana	plastid	71.18	71.36
EES11656	Sorghum	plastid	68.67	71.17
Os10t0496900-02	Rice	plastid	71.18	70.65
TraesCS2A01G590600.1	Wheat	plastid	68.17	70.1
TraesCS2B01G593000.1	Wheat	plastid	68.17	70.1
TraesCS2D01G563600.1	Wheat	golgi, plastid	67.92	69.85
TraesCS1D01G168700.2	Wheat	plastid	72.68	69.54
TraesCS1A01G171000.1	Wheat	golgi, plastid	72.43	69.3
Zm00001d001820_P001	Maize	plastid	66.92	68.99
HORVU2Hr1G006120.3	Barley	plastid	16.04	52.46
HORVU4Hr1G073090.1	Barley	plastid	18.3	52.14
HORVU2Hr1G119050.2	Barley	mitochondrion	48.87	52.0
HORVU5Hr1G104070.1	Barley	plastid	16.29	50.78
HORVU2Hr1G020490.1	Barley	plastid	20.05	49.38
CDY29840	Canola	plastid	76.94	48.5
CDX92832	Canola	plastid	76.94	48.19
Solyc03g025410.2.1	Tomato	nucleus	26.57	33.87
Solyc03g025400.2.1	Tomato	cytosol	26.82	33.86
Solyc08g081200.2.1	Tomato	cytosol	26.57	33.65
Solyc03g025390.2.1	Tomato	cytosol	26.32	33.55
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	26.07	33.23
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	26.32	32.81
Solyc10g086390.1.1	Tomato	mitochondrion	25.56	31.58
Solyc08g008060.1.1	Tomato	cytosol	24.81	31.43
Solyc08g082870.2.1	Tomato	cytosol	23.31	27.6
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	22.56	25.0
Solyc06g071610.1.1	Tomato	plastid	22.31	24.32
Solyc03g098460.2.1	Tomato	cytosol	22.31	23.12
Solyc12g042640.1.1	Tomato	cytosol	20.8	22.86
HORVU2Hr1G119090.2	Barley	plastid	22.06	20.8

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491
GO:GO:0016630	GO:GO:0055114	UniProt:K4CFW6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081
PANTHER:PTHR44419	PANTHER:PTHR44419:SF3	InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc07g054210.2
EnsemblPlants:Solyc07g054210.2.1	TIGRFAMs:TIGR01289	UniParc:UPI000276C3FC	SEG:seg	:	:

Description

Protochlorophyllide reductase C, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G03630) UniProtKB/Swiss-Prot;Acc:O48741]

Coordinates

chr7:-:62565942..62569145

Molecular Weight (calculated)

43201.7 Da

IEP (calculated)

9.663

GRAVY (calculated)

-0.209

Length

399 amino acids

Sequence
(BLAST)

001: MALQAASLLP SAFSLHKEGK TSSANLKDSS FFGVALSCNL KSKFTPAAGN KELTRKLAIV PIRAQTAATT PAITQSTSGQ KKTLRKGNVI ITGASSGLGL
101: ATAKAIGESG DWHVIMACRD FLKAEKAAKS LGIPKENYTV MHLDLASLES VRQFVDNFRR SGRPLDALVC NAAVYLPTAK EPTFTADGFE LSVGTNHLGH
201: FLLSRLLLDD LKQSDYPQKR LIIVGSITGN TNTLAGNVPP KANLGDLRGL SGGLNSLNCS PMIDGGEFDG AKAYKDSKVC NMLTMQEYHR RFHEETGIAF
301: ASLYPGCIAE TGLFRNHIPL FRTLFPPFQK YITKGYVSEE EAGKRLAQVV RDPSLSKSGV YWSWNSTSSS FENQLSKEAS DAEKARKLWE VSEKLVGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.