Factsheet for Zm00001d001820_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001820_P001
Zm00001d006805_P001
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d013937_P001
Zm00001d016570_P001
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d028871_P001
Zm00001d032576_P001
Zm00001d036342_P001
Zm00001d038803_P001
Zm00001d049553_P001
Zm00001d050563_P001
Zm00001d051288_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	Zm00001d001820_P001	AT1G03630.1	21798944
AT1G03630.1	Zm00001d013937_P001	AT1G03630.1	21798944
AT1G03630.1	Zm00001d032576_P001	AT1G03630.1	21798944
AT1G03630.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G03630.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT1G03630.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT1G03630.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT1G03630.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT1G03630.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT1G03630.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT1G03630.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT1G03630.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT1G03630.1	Zm00001d051288_P001	AT3G60600.1	21798944
AT1G03630.1	Zm00001d001820_P001	AT4G27440.1	21798944
AT1G03630.1	Zm00001d013937_P001	AT4G27440.1	21798944
AT1G03630.1	Zm00001d032576_P001	AT4G27440.1	21798944
AT1G03630.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT1G03630.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT1G03630.1	Zm00001d053677_P001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11656	Sorghum	plastid	94.83	95.32
Os04t0678700-01	Rice	plastid	87.08	87.08
TraesCS2B01G593000.1	Wheat	plastid	85.27	85.05
TraesCS2D01G563600.1	Wheat	golgi, plastid	85.01	84.79
TraesCS2A01G590600.1	Wheat	plastid	85.01	84.79
TraesCS2D01G563700.1	Wheat	cytosol	52.71	84.65
GSMUA_Achr3P14270_001	Banana	plastid	77.0	77.0
GSMUA_Achr7P04280_001	Banana	plastid	76.74	74.62
HORVU4Hr1G073090.1	Barley	plastid	26.36	72.86
HORVU5Hr1G104070.1	Barley	plastid	24.03	72.66
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	74.42	72.54
PGSC0003DMT400039734	Potato	plastid	74.42	72.54
HORVU2Hr1G006120.3	Barley	plastid	22.74	72.13
Solyc10g006900.2.1	Tomato	plastid	73.39	71.9
Zm00001d013937_P001	Maize	plastid	72.87	71.21
Zm00001d032576_P001	Maize	plastid	72.87	71.21
KRH27209	Soybean	nucleus, plastid	73.39	71.18
KRH55334	Soybean	plastid	73.39	71.18
PGSC0003DMT400064369	Potato	plastid	72.87	70.85
CDY29311	Canola	plastid	72.61	70.78
CDX89249	Canola	plastid	72.61	70.78
VIT_12s0059g00270.t01	Wine grape	plastid	72.87	70.68
Bra019049.1-P	Field mustard	plastid	72.61	70.6
VIT_19s0014g03160.t01	Wine grape	plastid	72.09	70.45
CDX89877	Canola	plastid	72.61	70.25
Bra026349.1-P	Field mustard	plastid	70.28	70.1
Bra033415.1-P	Field mustard	plastid	72.35	70.0
CDY51384	Canola	plastid	71.58	69.6
CDY15470	Canola	plastid	71.58	69.6
CDY18175	Canola	plastid	71.83	69.5
Bra030540.1-P	Field mustard	plastid	71.32	69.35
AT1G03630.1	Thale cress	plastid	71.58	69.08
AT4G27440.1	Thale cress	plastid	71.32	68.83
Bra003004.1-P	Field mustard	plastid	71.32	68.49
CDY14325	Canola	plastid	71.32	68.32
AT5G54190.1	Thale cress	plastid	71.32	68.15
HORVU2Hr1G020490.1	Barley	plastid	28.42	67.9
PGSC0003DMT400047264	Potato	plastid	68.99	67.09
Solyc07g054210.2.1	Tomato	plastid	68.99	66.92
KRH26074	Soybean	plastid	58.91	66.67
CDX98171	Canola	plastid	59.43	65.9
CDY18309	Canola	plastid	59.17	65.62
HORVU2Hr1G119050.2	Barley	mitochondrion	60.47	62.4
CDY29840	Canola	plastid	72.09	44.08
CDX92832	Canola	plastid	71.83	43.64
Zm00001d047150_P003	Maize	plastid	27.13	33.33
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	26.87	32.5
Zm00001d019754_P001	Maize	mitochondrion, plastid	28.68	31.44
Zm00001d029840_P003	Maize	plastid	26.87	31.14
Zm00001d025129_P001	Maize	mitochondrion	17.05	28.09
Zm00001d045495_P001	Maize	mitochondrion	24.03	25.76
Zm00001d039397_P001	Maize	cytosol	16.02	25.51
Zm00001d053067_P001	Maize	plastid	24.03	25.34
Zm00001d027353_P001	Maize	mitochondrion	23.26	24.93
Zm00001d054039_P001	Maize	cytosol	23.0	21.39
Zm00001d014994_P001	Maize	cytosol	23.51	19.12

Protein Annotations

KEGG:00860+1.3.1.33	EntrezGene:100194154	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	UniProt:A0A1D6DT56	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016491	GO:GO:0016630	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM12074.1
PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2	InterPro:Prochl_reduct	InterPro:SDR_fam
SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniParc:UPI000220BD61	EnsemblPlantsGene:Zm00001d001820	EnsemblPlants:Zm00001d001820_P001	EnsemblPlants:Zm00001d001820_T001
SEG:seg	:	:	:	:	:

Description

protochlorophyllide reductase1 protochlorophyllide reductase1

Coordinates

chr2:-:1439871..1441447

Molecular Weight (calculated)

41267.7 Da

IEP (calculated)

9.992

GRAVY (calculated)

-0.053

Length

387 amino acids

Sequence
(BLAST)

001: MALQAALLPS TLSSVPKKCS IAVAAKDTAF LSVSQKKVQA ASLSVRTRVA TTAPVATPGS STAAKDGKKT VRQGVVVITG ASSGLGLAAA KALAETGKWH
101: VVMACRDFLK AAKAAKGAGM ADGSYTIMHL DLASLDSVRQ FVDSFRRAGM PLDSLVCNAA IYRPTARTPT FTADGYEMSV GVNHLGHFLL ARLLLDDMQK
201: SDYPSRRLII LGSITGNTNT LAGNIPPKAG LGDLRGLAAG LRGQNGSAMI DGSESFDGAK AYKDSKICNM LTMQELHRRY HEETGITFAS LYPGCIATTG
301: LFREHIPLFR LLFPPFQKFV TKGFVSEAES GKRLAQVVSD PSLTKSGVYW SWNKDSASFE NQLSQEASDP EKAKKLWEIS EKLVGLA

Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA

Arabidopsis Description

PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.