Factsheet for Zm00001d047150_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91987	Sorghum	plastid	89.84	90.42
OQU92191	Sorghum	plastid	83.49	84.03
TraesCS1B01G221200.1	Wheat	cytosol	78.41	78.41
TraesCS1A01G207500.1	Wheat	cytosol	78.1	78.1
TraesCS1D01G210800.1	Wheat	plastid	77.46	76.73
Zm00001d029840_P003	Maize	plastid	80.95	76.35
Os10t0547900-01	Rice	cytosol	72.38	72.61
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	71.43	70.53
GSMUA_Achr2P18620_001	Banana	plastid	64.44	64.24
VIT_16s0050g00760.t01	Wine grape	plastid	63.49	63.9
PGSC0003DMT400040848	Potato	plastid	62.54	62.94
VIT_02s0025g03380.t01	Wine grape	cytosol	62.86	62.86
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	62.22	62.62
KRH38419	Soybean	plastid	62.22	61.44
Bra035220.1-P	Field mustard	cytosol	60.95	60.57
CDX86777	Canola	cytosol	60.95	60.57
PGSC0003DMT400040845	Potato	cytosol	60.0	60.38
KRH41194	Soybean	cytosol, plastid	60.32	60.32
CDY13264	Canola	cytosol	60.63	60.25
KRH59919	Soybean	cytosol, plastid	60.0	60.0
KRG91556	Soybean	cytosol	59.37	59.74
Solyc03g025410.2.1	Tomato	nucleus	59.37	59.74
Solyc08g008060.1.1	Tomato	cytosol	59.68	59.68
PGSC0003DMT400014810	Potato	mitochondrion	46.35	59.59
PGSC0003DMT400040847	Potato	cytosol	59.05	59.42
AT4G11410.1	Thale cress	cytosol, mitochondrion	59.68	59.31
Solyc08g081200.2.1	Tomato	cytosol	59.05	59.05
KRH08897	Soybean	cytosol, mitochondrion	58.73	58.92
PGSC0003DMT400032133	Potato	cytosol	58.73	58.73
Solyc03g025390.2.1	Tomato	cytosol	58.1	58.47
PGSC0003DMT400085601	Potato	plastid	29.52	57.76
AT4G23430.2	Thale cress	plastid	58.1	56.83
CDY10884	Canola	plastid	57.78	56.52
KRH38432	Soybean	cytosol	57.14	56.43
Solyc03g025400.2.1	Tomato	cytosol	56.51	56.33
Bra013690.1-P	Field mustard	plastid	57.78	56.17
KRH08898	Soybean	cytosol	56.19	56.01
CDX76338	Canola	cytosol, plastid	57.14	55.9
Bra020819.1-P	Field mustard	cytosol, plastid	57.14	55.9
KRH08894	Soybean	plastid	38.41	55.76
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	55.87	55.0
KRH38426	Soybean	cytosol	56.51	54.6
KRH38433	Soybean	cytosol	54.92	54.23
AT4G23420.3	Thale cress	plastid	56.51	53.45
CDY69917	Canola	endoplasmic reticulum	51.43	53.11
KRH35271	Soybean	plastid	58.73	53.01
Zm00001d025129_P001	Maize	mitochondrion	39.05	52.34
KRH35274	Soybean	cytosol, mitochondrion, plastid	58.73	51.53
KRG91557	Soybean	cytosol	33.97	51.44
Zm00001d019754_P001	Maize	mitochondrion, plastid	57.46	51.27
KRH38431	Soybean	plastid	52.38	51.08
CDY44096	Canola	mitochondrion, plastid	58.1	50.69
KRH08895	Soybean	cytosol	56.19	46.34
Zm00001d053067_P001	Maize	plastid	53.65	46.05
Zm00001d039397_P001	Maize	cytosol	34.92	45.27
Zm00001d045495_P001	Maize	mitochondrion	47.3	41.27
Zm00001d027353_P001	Maize	mitochondrion	46.67	40.72
VIT_16s0050g00750.t01	Wine grape	plastid	65.08	32.8
Zm00001d001820_P001	Maize	plastid	33.33	27.13
Zm00001d013937_P001	Maize	plastid	31.43	25.0
Zm00001d032576_P001	Maize	plastid	31.43	25.0
Zm00001d054039_P001	Maize	cytosol	29.52	22.36
Zm00001d014994_P001	Maize	cytosol	30.16	19.96

Protein Annotations

EMBL:BT062245	EnsemblPlants:Zm00001d047150_P003	EnsemblPlants:Zm00001d047150_T003	EnsemblPlantsGene:Zm00001d047150	EntrezGene:100272665	Gene3D:3.40.50.720
InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00080
PRINTS:PR00081	ProteinID:AQL05747.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0001948776	UniProt:C0HIT9
MapMan:35.1	:	:	:	:	:

Description

Short-chain dehydrogenase TIC 32 chloroplastic

Coordinates

chr9:+:120122544..120126124

Molecular Weight (calculated)

33978.9 Da

IEP (calculated)

8.736

GRAVY (calculated)

0.115

Length

315 amino acids

Sequence
(BLAST)

001: MWWFYRKGPS GFSGASTAEE VTAGVDGHLL VAVITGATSG IGLETARVLA LRGVRVVMAV RNVSAGLMAK DAIVAKTPDA RIDVLELDLS SIASVRRFAS
101: EFDSLKLPLN ILINNAGVMT RNCTRSCDGL ELHFATNHIG HFLLTNLVLE NMKSTCRDTG TEGRIVNVTS AGHVMTYPEG IRFETIRDPS GLNDFIAYGQ
201: SKLANILHTN ELSRIFKEEG VNISANSVHP GLIATNLFRA FGRTIIAAFF NTVGRIVRRS VEQGAATTCY VAVHPQVKGL SGKYFANCNI ASPSSQASDA
301: ELAKKLWEFS LQTVS

Best Arabidopsis Sequence Match ( AT4G11410.1 )
(BLAST)

001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LDY7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.