Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g025370.2.1 | Tomato | cytosol, nucleus, plastid | 95.53 | 95.53 |
| VIT_16s0050g00760.t01 | Wine grape | plastid | 75.72 | 75.72 |
| KRH38419 | Soybean | plastid | 73.48 | 72.1 |
| GSMUA_AchrUn_... | Banana | cytosol | 70.29 | 70.29 |
| PGSC0003DMT400040845 | Potato | cytosol | 69.97 | 69.97 |
| PGSC0003DMT400032133 | Potato | cytosol | 68.05 | 67.62 |
| PGSC0003DMT400040847 | Potato | cytosol | 67.09 | 67.09 |
| GSMUA_Achr2P18620_001 | Banana | plastid | 67.73 | 67.09 |
| EER96376 | Sorghum | mitochondrion, plastid | 67.41 | 66.77 |
| Os09t0570300-01 | Rice | plasma membrane | 67.09 | 66.46 |
| TraesCS4B01G002900.1 | Wheat | golgi | 66.77 | 66.14 |
| TraesCS4D01G002700.2 | Wheat | mitochondrion, plastid | 66.13 | 65.71 |
| TraesCS4B01G003400.1 | Wheat | plastid | 65.5 | 65.08 |
| TraesCS4D01G003200.1 | Wheat | golgi | 65.5 | 64.87 |
| TraesCS4A01G311400.1 | Wheat | mitochondrion, plastid | 65.18 | 64.56 |
| TraesCS4D01G003400.2 | Wheat | mitochondrion | 65.5 | 63.66 |
| OQU92195 | Sorghum | cytosol | 63.9 | 63.49 |
| PGSC0003DMT400085601 | Potato | plastid | 32.59 | 63.35 |
| Zm00001d047150_P003 | Maize | plastid | 62.94 | 62.54 |
| EER91987 | Sorghum | plastid | 62.3 | 62.3 |
| PGSC0003DMT400014810 | Potato | mitochondrion | 48.24 | 61.63 |
| Os04t0291100-01 | Rice | mitochondrion | 61.66 | 61.47 |
| TraesCS1A01G207500.1 | Wheat | cytosol | 61.34 | 60.95 |
| TraesCS1B01G221200.1 | Wheat | cytosol | 60.38 | 60.0 |
| OQU92191 | Sorghum | plastid | 59.74 | 59.74 |
| Zm00001d025129_P001 | Maize | mitochondrion | 44.41 | 59.15 |
| Zm00001d019754_P001 | Maize | mitochondrion, plastid | 66.45 | 58.92 |
| TraesCS1D01G210800.1 | Wheat | plastid | 59.74 | 58.8 |
| Os10t0547900-01 | Rice | cytosol | 58.15 | 57.96 |
| Zm00001d029840_P003 | Maize | plastid | 61.34 | 57.48 |
| TraesCS3B01G220800.1 | Wheat | mitochondrion, plastid | 21.09 | 57.39 |
| TraesCS5B01G461100.1 | Wheat | mitochondrion, plastid | 21.09 | 57.39 |
| TraesCS4A01G492800.1 | Wheat | mitochondrion, plastid | 21.09 | 57.39 |
| Os10t0548000-02 | Rice | cytosol, peroxisome, plastid | 58.15 | 57.05 |
| PGSC0003DMT400022813 | Potato | mitochondrion | 58.15 | 56.88 |
| PGSC0003DMT400049292 | Potato | mitochondrion | 57.83 | 56.04 |
| PGSC0003DMT400069439 | Potato | plastid | 37.38 | 47.95 |
| PGSC0003DMT400046811 | Potato | plastid | 48.56 | 45.92 |
| PGSC0003DMT400031933 | Potato | cytosol | 47.28 | 43.92 |
| PGSC0003DMT400073742 | Potato | cytosol | 30.99 | 26.72 |
| PGSC0003DMT400047264 | Potato | plastid | 33.87 | 26.63 |
| PGSC0003DMT400064369 | Potato | plastid | 33.87 | 26.63 |
| PGSC0003DMT400039734 | Potato | plastid | 32.91 | 25.94 |
| PGSC0003DMT400026316 | Potato | cytosol | 31.63 | 25.71 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400040848 | EnsemblPlantsGene:PGSC0003DMG400015793 | EntrezGene:102580426 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR24320 | PANTHER:PTHR24320:SF121 | PFAM:PF00106 | PGSC:PGSC0003DMG400015793 | PRINTS:PR00080 | PRINTS:PR00081 |
| RefSeq:XP_006353886.1 | SUPFAM:SSF51735 | UniParc:UPI0002959364 | UniProt:M1BAI9 | MapMan:23.1.3.5.1 | : |
Description
Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400015793]
Coordinates
chr3:+:43512841..43519297
Molecular Weight (calculated)
33739.3 Da
IEP (calculated)
8.995
GRAVY (calculated)
-0.113
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MWFLSKKGPS GFSPNSTAEE VTQGIDGSAL TAIVTGASSG IGAETARVLA LRGVHVIMGV RNISAGEQVK ETIIKDVPQA KIDALELDLS SLVSVRNFAS
101: NYNSLGLPLN LLINNAGIMA TPFTLSKDKI ELQFATNHVG HFLLTNLLLD TMKKTARESR KEGRIVNVSS RRHKFSYNEG IRFDKINDQS GYNGLSAYGQ
201: SKLANVLHAN ELARHLKDEG VEITANSLHP GAIATNLFRQ HSIISGIVDV IGKHVMKNVE QGAATTCYVA LHPDVKGVSG KYYADCNIAE ASPQANDAGL
301: AKRLWDFTTS LVH
101: NYNSLGLPLN LLINNAGIMA TPFTLSKDKI ELQFATNHVG HFLLTNLLLD TMKKTARESR KEGRIVNVSS RRHKFSYNEG IRFDKINDQS GYNGLSAYGQ
201: SKLANVLHAN ELARHLKDEG VEITANSLHP GAIATNLFRQ HSIISGIVDV IGKHVMKNVE QGAATTCYVA LHPDVKGVSG KYYADCNIAE ASPQANDAGL
301: AKRLWDFTTS LVH
001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGAGAKVK EDIVKQVPGA KVDVMELELS SMESVRKFAS
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.