Factsheet for PGSC0003DMT400069439

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038470
PGSC0003DMT400076081

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	PGSC0003DMT400038470	AT5G39730.1	21798944
AT5G50130.1	PGSC0003DMT400076081	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071610.1.1	Tomato	plastid	92.21	61.48
PGSC0003DMT400046811	Potato	plastid	80.74	59.52
VIT_17s0000g08920.t01	Wine grape	cytosol	77.46	57.27
KRH54355	Soybean	cytosol	69.26	51.21
KRH03249	Soybean	mitochondrion, plastid	68.44	49.55
KRH57109	Soybean	mitochondrion	68.03	49.26
AT5G50130.1	Thale cress	mitochondrion	67.21	48.38
KRH63592	Soybean	plastid	68.44	46.91
GSMUA_Achr1P25440_001	Banana	cytosol	58.61	46.43
PGSC0003DMT400085601	Potato	plastid	29.92	45.34
PGSC0003DMT400031933	Potato	cytosol	52.87	38.28
PGSC0003DMT400040848	Potato	plastid	47.95	37.38
PGSC0003DMT400022813	Potato	mitochondrion	47.95	36.56
PGSC0003DMT400040845	Potato	cytosol	46.31	36.1
PGSC0003DMT400049292	Potato	mitochondrion	47.13	35.6
PGSC0003DMT400040847	Potato	cytosol	44.67	34.82
CDX71585	Canola	mitochondrion	47.95	34.51
PGSC0003DMT400032133	Potato	cytosol	43.85	33.97
Bra037939.1-P	Field mustard	cytosol	63.11	30.99
PGSC0003DMT400014810	Potato	mitochondrion	28.69	28.57
CDY37755	Canola	mitochondrion, plastid	63.11	24.72
PGSC0003DMT400073742	Potato	cytosol	28.69	19.28
PGSC0003DMT400026316	Potato	cytosol	27.87	17.66
PGSC0003DMT400047264	Potato	plastid	28.28	17.34
PGSC0003DMT400039734	Potato	plastid	26.64	16.37
PGSC0003DMT400064369	Potato	plastid	25.82	15.83

Protein Annotations

EnsemblPlants:PGSC0003DMT400069439	EnsemblPlantsGene:PGSC0003DMG401026994	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF120	PFAM:PF00106	PGSC:PGSC0003DMG401026994	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000295814B	UniProt:M1CKF6	MapMan:35.1	:	:

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG401026994]

Coordinates

chr6:-:52454719..52456956

Molecular Weight (calculated)

26901.7 Da

IEP (calculated)

9.916

GRAVY (calculated)

0.061

Length

244 amino acids

Sequence
(BLAST)

001: MKTTLKYLAG IAGPSGYGSK TTAEQVTQVC SVSFTSQLTA IITGATSGIG AETARVLAKR GVRLVIPARD LKKAAILKEA IKKQSPWADI ILLEIDLSSF
101: ASIQRFCAQF LSLGLPLHIL INNAGKFSQK LEFSEDKFEL SFATNYLGHF LLTEMLLDKM VETAEQTGIE GRIVNVSSVV HNWVKRDKFC FSQMLNPKNY
201: NGTRAYAQSK LANILHAKEL SRQLKVNNIC LSFSFFTRGV EVAD

Best Arabidopsis Sequence Match ( AT5G50130.9 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPIRYN
201: GTRAYAQSKL ATILHAKALS KQLKDRNANV TINAVHPGIV KTGIIRAHKG LFTGKIKHF

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.