Factsheet for PGSC0003DMT400014810

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g008060.1.1	Tomato	cytosol	91.84	71.43
VIT_02s0025g03380.t01	Wine grape	cytosol	70.2	54.6
PGSC0003DMT400040845	Potato	cytosol	66.94	52.4
PGSC0003DMT400032133	Potato	cytosol	67.35	52.38
KRH59919	Soybean	cytosol, plastid	65.31	50.79
KRH41194	Soybean	cytosol, plastid	64.9	50.48
PGSC0003DMT400040847	Potato	cytosol	64.08	50.16
AT4G11410.1	Thale cress	cytosol, mitochondrion	64.49	49.84
GSMUA_AchrUn_...	Banana	cytosol	63.27	49.52
CDY10884	Canola	plastid	64.9	49.38
Zm00001d025129_P001	Maize	mitochondrion	47.35	49.36
Bra013690.1-P	Field mustard	plastid	64.08	48.46
CDX86777	Canola	cytosol	62.45	48.27
Bra035220.1-P	Field mustard	cytosol	62.45	48.27
PGSC0003DMT400040848	Potato	plastid	61.63	48.24
CDY13264	Canola	cytosol	61.63	47.63
AT4G23430.2	Thale cress	plastid	61.63	46.89
EER96376	Sorghum	mitochondrion, plastid	60.41	46.84
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	60.0	46.67
Zm00001d047150_P003	Maize	plastid	59.59	46.35
EER91987	Sorghum	plastid	59.18	46.33
TraesCS4D01G003200.1	Wheat	golgi	59.59	46.2
TraesCS4B01G003400.1	Wheat	plastid	59.18	46.03
Os09t0570300-01	Rice	plasma membrane	59.18	45.89
TraesCS4B01G002900.1	Wheat	golgi	59.18	45.89
GSMUA_Achr2P18620_001	Banana	plastid	59.18	45.89
OQU92195	Sorghum	cytosol	58.78	45.71
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	58.78	45.57
AT4G23420.3	Thale cress	plastid	61.22	45.05
OQU92191	Sorghum	plastid	57.14	44.73
Bra020819.1-P	Field mustard	cytosol, plastid	57.96	44.1
CDX76338	Canola	cytosol, plastid	57.96	44.1
CDY44096	Canola	mitochondrion, plastid	64.49	43.77
TraesCS1B01G221200.1	Wheat	cytosol	55.92	43.49
Os10t0547900-01	Rice	cytosol	55.51	43.31
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	56.33	43.26
TraesCS1A01G207500.1	Wheat	cytosol	55.51	43.17
TraesCS1D01G210800.1	Wheat	plastid	55.92	43.08
TraesCS4D01G003400.2	Wheat	mitochondrion	55.92	42.55
Zm00001d029840_P003	Maize	plastid	57.55	42.22
PGSC0003DMT400085601	Potato	plastid	27.35	41.61
Os04t0291100-01	Rice	mitochondrion	53.06	41.4
PGSC0003DMT400022813	Potato	mitochondrion	53.88	41.25
Zm00001d019754_P001	Maize	mitochondrion, plastid	58.78	40.79
PGSC0003DMT400049292	Potato	mitochondrion	53.47	40.56
CDY69917	Canola	endoplasmic reticulum	50.2	40.33
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	15.51	33.04
PGSC0003DMT400046811	Potato	plastid	43.67	32.33
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	15.1	32.17
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	15.1	32.17
PGSC0003DMT400031933	Potato	cytosol	40.82	29.67
PGSC0003DMT400069439	Potato	plastid	28.57	28.69
PGSC0003DMT400026316	Potato	cytosol	30.61	19.48
PGSC0003DMT400064369	Potato	plastid	29.39	18.09
PGSC0003DMT400039734	Potato	plastid	28.98	17.88
PGSC0003DMT400047264	Potato	plastid	28.57	17.59
PGSC0003DMT400073742	Potato	cytosol	24.9	16.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400014810	EnsemblPlantsGene:PGSC0003DMG400005781	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF146	PGSC:PGSC0003DMG400005781	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000294B9B8
UniProt:M1A4X4	MapMan:35.1	:	:	:	:

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400005781]

Coordinates

chr8:+:4865572..4869606

Molecular Weight (calculated)

26662.8 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.156

Length

245 amino acids

Sequence
(BLAST)

001: MWIFGRKGTS GFSCCSTAEE VTQGINGFGL TAIVTGATSG IGMETTRVLA LHGATSGIGM ETTRVLALHG HFLLTNLLLE NMKNTAKNSK NEGRIVNVAS
101: AAHDFAYSQG IIFDKINDKE SYHRFHAYGQ SKLANILHAN ELAKRLKEEG VNITANSVHP GPIATNIMRY DNILHGIVNW IGRYVLKNIE QGASTTCYVA
201: LHPQVKGLSG EYFSDNNIAT NTTTSLAKDS DLAKKLWEFS LDLTK

Best Arabidopsis Sequence Match ( AT4G11410.1 )
(BLAST)

001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LDY7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.