Factsheet for PGSC0003DMT400040845

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025410.2.1	Tomato	nucleus	97.12	97.12
PGSC0003DMT400040847	Potato	cytosol	80.19	80.19
KRG91556	Soybean	cytosol	77.96	77.96
PGSC0003DMT400085601	Potato	plastid	37.7	73.29
GSMUA_AchrUn_...	Banana	cytosol	72.2	72.2
GSMUA_Achr2P18620_001	Banana	plastid	70.93	70.25
PGSC0003DMT400040848	Potato	plastid	69.97	69.97
Os09t0570300-01	Rice	plasma membrane	70.29	69.62
KRH08894	Soybean	plastid	48.24	69.59
PGSC0003DMT400032133	Potato	cytosol	69.65	69.21
KRH08897	Soybean	cytosol, mitochondrion	69.33	69.11
EER96376	Sorghum	mitochondrion, plastid	69.65	68.99
KRH38432	Soybean	cytosol	69.97	68.65
KRH35271	Soybean	plastid	76.36	68.48
TraesCS4D01G003200.1	Wheat	golgi	68.37	67.72
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	68.05	67.41
TraesCS4B01G002900.1	Wheat	golgi	68.05	67.41
KRH38433	Soybean	cytosol	68.69	67.4
KRH35274	Soybean	cytosol, mitochondrion, plastid	77.0	67.13
KRH08898	Soybean	cytosol	67.73	67.09
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	67.41	66.98
PGSC0003DMT400014810	Potato	mitochondrion	52.4	66.94
KRG91557	Soybean	cytosol	44.41	66.83
TraesCS4B01G003400.1	Wheat	plastid	66.77	66.35
KRH38426	Soybean	cytosol	69.01	66.26
KRH38431	Soybean	plastid	67.73	65.63
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	23.64	64.35
TraesCS4D01G003400.2	Wheat	mitochondrion	65.81	63.98
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	23.32	63.48
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	23.32	63.48
OQU92195	Sorghum	cytosol	61.98	61.59
Zm00001d019754_P001	Maize	mitochondrion, plastid	68.69	60.91
EER91987	Sorghum	plastid	60.38	60.38
Zm00001d047150_P003	Maize	plastid	60.38	60.0
Os04t0291100-01	Rice	mitochondrion	60.06	59.87
TraesCS1B01G221200.1	Wheat	cytosol	59.74	59.37
Os10t0547900-01	Rice	cytosol	59.42	59.24
PGSC0003DMT400022813	Potato	mitochondrion	60.06	58.75
TraesCS1A01G207500.1	Wheat	cytosol	59.11	58.73
Zm00001d025129_P001	Maize	mitochondrion	44.09	58.72
OQU92191	Sorghum	plastid	58.15	58.15
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	59.11	57.99
TraesCS1D01G210800.1	Wheat	plastid	58.47	57.55
Zm00001d029840_P003	Maize	plastid	61.34	57.48
PGSC0003DMT400049292	Potato	mitochondrion	59.11	57.28
KRH08895	Soybean	cytosol	68.37	56.02
PGSC0003DMT400069439	Potato	plastid	36.1	46.31
PGSC0003DMT400046811	Potato	plastid	47.6	45.02
PGSC0003DMT400031933	Potato	cytosol	47.28	43.92
VIT_16s0050g00750.t01	Wine grape	plastid	77.32	38.72
PGSC0003DMT400064369	Potato	plastid	35.14	27.64
PGSC0003DMT400047264	Potato	plastid	34.82	27.39
PGSC0003DMT400039734	Potato	plastid	34.5	27.2
PGSC0003DMT400026316	Potato	cytosol	31.63	25.71
PGSC0003DMT400073742	Potato	cytosol	29.71	25.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400040845	EnsemblPlantsGene:PGSC0003DMG401015792	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF121	PFAM:PF00106	PGSC:PGSC0003DMG401015792	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0002965CB6	UniProt:M1BAI7	MapMan:23.1.3.5.1	:	:

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG401015792]

Coordinates

chr3:+:43476074..43482115

Molecular Weight (calculated)

34178.2 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.169

Length

313 amino acids

Sequence
(BLAST)

001: MWLFKRKGPS GFSSSSTAEE VTHGIDGSGL TAIVTGASSG IGSETSRVLA LRGVHVIMAV RNMTAGENVR DAIVMEIPAA KVDTMELDLS SLASVKKFAS
101: DFKSSGRPLN LLINNAGIMA TPFMLSKDNI ELQFATNHLG HFLLTNLLLE KMKETARKTK REGRIVNVSS EAHRFAYREG IRFDKINDPK SYNSYGAYGQ
201: SKLANILHAN ELTRRLKEDG VEITANSLHP GTITTNLFRH MGIFDGLVGT LGKLLLKNVQ QGASTTCYVA LNPQVKGVSG EYFSDNNLAK TTAMAKDMDL
301: AKRLWDFSMD LVK

Best Arabidopsis Sequence Match ( AT4G23420.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGAGAKVK EDIVKQVPGA KVDVMELELS SMESVRKFAS
101: EYKSAGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNVSS EAHRYSYPEG VRFDKINDES SYSSIRAYGQ
201: SKLCNVLHAN ELAKQLKEDG VNITANSLHP GAIMTNLWGY FNSYLAGAVG AVAKYMVKSV PQGAATTCYV ALNPQVAGVT GEYFSDSNIA KPIELVKDTE
301: LAKKLWDFST KLTDSQ

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JNJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.