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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 3
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400040845 Potato cytosol 97.12 97.12
Solyc03g025390.2.1 Tomato cytosol 80.83 80.83
Solyc03g025400.2.1 Tomato cytosol 80.51 79.75
KRG91556 Soybean cytosol 78.27 78.27
GSMUA_AchrUn_... Banana cytosol 72.2 72.2
KRH08894 Soybean plastid 48.56 70.05
GSMUA_Achr2P18620_001 Banana plastid 69.97 69.3
Os09t0570300-01 Rice plasma membrane 69.97 69.3
KRH08897 Soybean cytosol, mitochondrion 69.33 69.11
Solyc03g025370.2.1 Tomato cytosol, nucleus, plastid 68.69 68.69
Solyc08g008060.1.1 Tomato cytosol 69.01 68.57
Solyc08g081200.2.1 Tomato cytosol 69.01 68.57
KRH35271 Soybean plastid 76.36 68.48
EER96376 Sorghum mitochondrion, plastid 68.69 68.04
KRH38432 Soybean cytosol 69.01 67.71
KRH35274 Soybean cytosol, mitochondrion, plastid 77.32 67.41
KRH38433 Soybean cytosol 68.37 67.08
KRG91557 Soybean cytosol 44.41 66.83
KRH08898 Soybean cytosol 67.41 66.77
TraesCS4B01G002900.1 Wheat golgi 67.09 66.46
TraesCS4D01G003200.1 Wheat golgi 67.09 66.46
TraesCS4A01G311400.1 Wheat mitochondrion, plastid 67.09 66.46
TraesCS4D01G002700.2 Wheat mitochondrion, plastid 66.13 65.71
KRH38426 Soybean cytosol 68.05 65.34
TraesCS4B01G003400.1 Wheat plastid 65.5 65.08
KRH38431 Soybean plastid 67.09 65.02
TraesCS4D01G003400.2 Wheat mitochondrion 65.5 63.66
TraesCS3B01G220800.1 Wheat mitochondrion, plastid 23.32 63.48
TraesCS5B01G461100.1 Wheat mitochondrion, plastid 23.32 63.48
TraesCS4A01G492800.1 Wheat mitochondrion, plastid 23.0 62.61
Zm00001d019754_P001 Maize mitochondrion, plastid 69.01 61.19
OQU92195 Sorghum cytosol 61.34 60.95
EER91987 Sorghum plastid 59.74 59.74
Zm00001d047150_P003 Maize plastid 59.74 59.37
Os04t0291100-01 Rice mitochondrion 59.11 58.92
TraesCS1B01G221200.1 Wheat cytosol 59.11 58.73
Zm00001d025129_P001 Maize mitochondrion 44.09 58.72
Os10t0547900-01 Rice cytosol 58.79 58.6
TraesCS1A01G207500.1 Wheat cytosol 58.47 58.1
OQU92191 Sorghum plastid 57.83 57.83
Os10t0548000-02 Rice cytosol, peroxisome, plastid 58.47 57.37
TraesCS1D01G210800.1 Wheat plastid 58.15 57.23
Zm00001d029840_P003 Maize plastid 60.7 56.89
Solyc09g010510.2.1 Tomato cytosol, mitochondrion, plastid 57.83 56.56
KRH08895 Soybean cytosol 68.37 56.02
Solyc10g086390.1.1 Tomato mitochondrion 57.19 55.42
Solyc08g082870.2.1 Tomato cytosol 45.69 42.43
Solyc03g112540.2.1 Tomato endoplasmic reticulum 46.96 40.83
Solyc06g071610.1.1 Tomato plastid 44.73 38.25
VIT_16s0050g00750.t01 Wine grape plastid 76.04 38.08
Solyc10g006900.2.1 Tomato plastid 33.87 26.84
Solyc07g054210.2.1 Tomato plastid 33.87 26.57
Solyc12g013710.1.1 Tomato extracellular, nucleus, plastid 33.23 26.2
Solyc03g098460.2.1 Tomato cytosol 31.31 25.45
Solyc12g042640.1.1 Tomato cytosol 28.75 24.79
Protein Annotations
EnsemblPlants:Solyc03g025410.2.1EnsemblPlantsGene:Solyc03g025410.2Gene3D:3.40.50.720GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:NAD(P)-bd_dom_sfInterPro:SDR_famPANTHER:PTHR24320
PANTHER:PTHR24320:SF121PFAM:PF00106PRINTS:PR00080PRINTS:PR00081SEG:segSUPFAM:SSF51735
UniParc:UPI0002768C8AUniProt:K4BF14MapMan:23.1.3.5.1:::
Description
No Description!
Coordinates
chr3:-:2828265..2833855
Molecular Weight (calculated)
34146.1 Da
IEP (calculated)
10.022
GRAVY (calculated)
-0.180
Length
313 amino acids
Sequence
(BLAST)
001: MWLFKRKGPS GFSSSSTAEE VTHGIDGSGL TAIVTGASSG IGSETSRVLA LRGVHVIMAV RNMTSGKDVR DAIVTEIPAA KVDTMELDLS SLASVKKFAS
101: DFKSSGRPLN LLINNAGIMA TPFMLSKDNI ELQFATNHVG HFLLTNLLLE KMKETARKTK REGRIVNVSS EAHRFAYREG IRFDKINDPK SYNSYGAYGQ
201: SKLANILHAN ELTRRLKEDG VEISANSLHP GTITTNLFRH MGIFDGLVGT LGKLLLKNVQ QGASTTCYLA LNPQVKGVSG EYFSDNNLAK TTALAKDMDL
301: AKRLWDFSMD LIK
Best Arabidopsis Sequence Match ( AT4G23430.2 )
(BLAST)
001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS
Arabidopsis Description
TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.