Factsheet for Zm00001d019754_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96376	Sorghum	mitochondrion, plastid	83.29	93.04
Os09t0570300-01	Rice	plasma membrane	73.37	81.96
TraesCS4B01G003400.1	Wheat	plastid	69.69	78.1
TraesCS4D01G003200.1	Wheat	golgi	69.69	77.85
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	68.84	77.14
TraesCS4B01G002900.1	Wheat	golgi	68.84	76.9
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	68.56	76.58
GSMUA_AchrUn_...	Banana	cytosol	65.16	73.48
TraesCS4D01G003400.2	Wheat	mitochondrion	64.31	70.5
Solyc03g025410.2.1	Tomato	nucleus	61.19	69.01
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	22.38	68.7
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	22.38	68.7
PGSC0003DMT400040845	Potato	cytosol	60.91	68.69
KRG91556	Soybean	cytosol	60.62	68.37
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	22.1	67.83
VIT_02s0025g03380.t01	Wine grape	cytosol	60.34	67.62
KRH59919	Soybean	cytosol, plastid	60.34	67.62
KRH08894	Soybean	plastid	41.08	66.82
PGSC0003DMT400040848	Potato	plastid	58.92	66.45
KRH41194	Soybean	cytosol, plastid	58.92	66.03
VIT_16s0050g00760.t01	Wine grape	plastid	58.36	65.81
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	58.07	65.5
PGSC0003DMT400032133	Potato	cytosol	58.36	65.4
Solyc08g081200.2.1	Tomato	cytosol	58.07	65.08
KRH08897	Soybean	cytosol, mitochondrion	57.79	64.97
Solyc03g025390.2.1	Tomato	cytosol	57.51	64.86
Bra035220.1-P	Field mustard	cytosol	57.79	64.35
CDX86777	Canola	cytosol	57.79	64.35
PGSC0003DMT400040847	Potato	cytosol	56.94	64.22
CDY13264	Canola	cytosol	57.51	64.04
AT4G11410.1	Thale cress	cytosol, mitochondrion	57.22	63.72
CDY10884	Canola	plastid	58.07	63.66
CDX76338	Canola	cytosol, plastid	58.07	63.66
Bra020819.1-P	Field mustard	cytosol, plastid	58.07	63.66
KRH38419	Soybean	plastid	57.51	63.64
KRH08898	Soybean	cytosol	56.37	62.97
Bra013690.1-P	Field mustard	plastid	57.79	62.96
AT4G23430.2	Thale cress	plastid	57.22	62.73
Solyc03g025400.2.1	Tomato	cytosol	56.09	62.66
KRH38433	Soybean	cytosol	56.37	62.38
KRH38432	Soybean	cytosol	56.37	62.38
CDY69917	Canola	endoplasmic reticulum	53.54	61.97
KRH38426	Soybean	cytosol	56.66	61.35
AT4G23420.3	Thale cress	plastid	57.22	60.66
KRH38431	Soybean	plastid	54.96	60.06
PGSC0003DMT400085601	Potato	plastid	27.2	59.63
KRH35271	Soybean	plastid	58.36	59.03
PGSC0003DMT400014810	Potato	mitochondrion	40.79	58.78
KRH35274	Soybean	cytosol, mitochondrion, plastid	59.77	58.77
Solyc08g008060.1.1	Tomato	cytosol	52.41	58.73
Zm00001d047150_P003	Maize	plastid	51.27	57.46
CDY44096	Canola	mitochondrion, plastid	58.07	56.79
KRG91557	Soybean	cytosol	33.43	56.73
Zm00001d025129_P001	Maize	mitochondrion	36.83	55.32
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	50.14	55.31
KRH08895	Soybean	cytosol	58.07	53.66
Zm00001d029840_P003	Maize	plastid	50.14	52.99
Zm00001d053067_P001	Maize	plastid	51.84	49.86
Zm00001d039397_P001	Maize	cytosol	32.86	47.74
Zm00001d045495_P001	Maize	mitochondrion	42.78	41.83
Zm00001d027353_P001	Maize	mitochondrion	42.49	41.55
VIT_16s0050g00750.t01	Wine grape	plastid	62.32	35.2
Zm00001d001820_P001	Maize	plastid	31.44	28.68
Zm00001d032576_P001	Maize	plastid	28.33	25.25
Zm00001d054039_P001	Maize	cytosol	29.18	24.76
Zm00001d013937_P001	Maize	plastid	27.76	24.75
Zm00001d014994_P001	Maize	cytosol	30.59	22.69

Protein Annotations

EnsemblPlants:Zm00001d019754_P001	EnsemblPlants:Zm00001d019754_T001	EnsemblPlantsGene:Zm00001d019754	EntrezGene:100217007	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_fam	PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081
ProteinID:ONM53691.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000844A229	UniProt:A0A1D6I083	MapMan:35.1

Description

Short-chain dehydrogenase TIC 32 chloroplastic

Coordinates

chr7:-:56516523..56522634

Molecular Weight (calculated)

38297.1 Da

IEP (calculated)

7.794

GRAVY (calculated)

0.082

Length

353 amino acids

Sequence
(BLAST)

001: MMTSWLLGRR GPSGFSWSST ADQVTQGISA AGLTAIVTGP YLFPNISSSF FIVFIISNPA QSHPGASSGI GAETARTLAL RGAHVIMAVR SLPAAQAVKD
101: AVLAQAPGAK LDVMELDLSS MASVRAFASQ FIDRGLPLNI LINNAGVMAI PFALSKDGIE MQFATNHVGH FLLTHLLLDT MKRTSHESNL EGRIVNVSSE
201: GHRLAYREGI RFDKINDESV YSSIGAYGQS KLANILHANE LARRFELLVN KDHWAVTEDN VNITANSLHP GSIITNLLRY HSILDVLHRT LGKLVLKNAE
301: QGAATTCYLA LHPHVKGVSG KYFCDCNLYE PSANAKDMEL AKRLWDFGVE LIT

Best Arabidopsis Sequence Match ( AT4G11410.1 )
(BLAST)

001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LDY7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.