Factsheet for Bra020819.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76338	Canola	cytosol, plastid	100.0	100.0
Bra013690.1-P	Field mustard	plastid	85.4	84.88
PGSC0003DMT400032133	Potato	cytosol	68.32	69.84
VIT_02s0025g03380.t01	Wine grape	cytosol	67.7	69.21
Solyc08g081200.2.1	Tomato	cytosol	67.39	68.89
KRH59919	Soybean	cytosol, plastid	66.46	67.94
KRH41194	Soybean	cytosol, plastid	66.46	67.94
Bra035220.1-P	Field mustard	cytosol	65.84	66.88
GSMUA_AchrUn_...	Banana	cytosol	64.29	66.13
EER96376	Sorghum	mitochondrion, plastid	63.35	64.56
Os09t0570300-01	Rice	plasma membrane	62.11	63.29
GSMUA_Achr2P18620_001	Banana	plastid	61.18	62.34
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	60.56	61.9
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	22.05	61.74
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	60.56	61.71
TraesCS4B01G002900.1	Wheat	golgi	60.56	61.71
TraesCS4D01G003200.1	Wheat	golgi	60.56	61.71
Solyc08g008060.1.1	Tomato	cytosol	59.63	60.95
TraesCS4B01G003400.1	Wheat	plastid	59.63	60.95
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	21.43	60.0
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	21.12	59.13
OQU92195	Sorghum	cytosol	57.76	59.05
Zm00001d019754_P001	Maize	mitochondrion, plastid	63.66	58.07
PGSC0003DMT400014810	Potato	mitochondrion	44.1	57.96
OQU92191	Sorghum	plastid	56.21	57.83
EER91987	Sorghum	plastid	56.21	57.83
TraesCS4D01G003400.2	Wheat	mitochondrion	57.76	57.76
Bra005188.1-P	Field mustard	cytosol	56.52	57.41
Bra017180.1-P	Field mustard	cytosol	57.14	57.32
Zm00001d047150_P003	Maize	plastid	55.9	57.14
TraesCS1A01G207500.1	Wheat	cytosol	55.9	57.14
Os04t0291100-01	Rice	mitochondrion	55.59	57.01
Zm00001d029840_P003	Maize	plastid	59.01	56.89
TraesCS1B01G221200.1	Wheat	cytosol	55.59	56.83
Os10t0547900-01	Rice	cytosol	54.66	56.05
TraesCS1D01G210800.1	Wheat	plastid	54.97	55.66
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	54.97	55.49
Bra009580.1-P	Field mustard	mitochondrion	55.28	53.78
Bra005729.1-P	Field mustard	mitochondrion	54.66	53.17
Zm00001d025129_P001	Maize	mitochondrion	38.51	52.77
Bra019248.1-P	Field mustard	cytosol	45.65	44.28
Bra013757.1-P	Field mustard	cytosol	43.48	42.17
Bra027706.1-P	Field mustard	plastid	44.72	41.62
Bra027725.1-P	Field mustard	plastid	44.41	40.4
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	32.61	28.15
Bra037939.1-P	Field mustard	cytosol	42.55	27.57
Bra029096.1-P	Field mustard	nucleus	32.3	27.51
Bra019049.1-P	Field mustard	plastid	32.92	26.63
Bra026349.1-P	Field mustard	plastid	31.68	26.29
Bra022628.1-P	Field mustard	cytosol, mitochondrion	32.3	25.94
Bra030540.1-P	Field mustard	plastid	31.99	25.88
Bra003004.1-P	Field mustard	plastid	31.99	25.56
Bra033415.1-P	Field mustard	plastid	31.37	25.25
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	31.37	24.88
Bra027724.1-P	Field mustard	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra020819.1	EnsemblPlants:Bra020819.1-P	EnsemblPlantsGene:Bra020819	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0002545FE7	UniProt:M4DWC5	MapMan:23.1.3.5.1	:	:	:

Description

AT4G23430 (E=2e-135) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA08:+:11913825..11915802

Molecular Weight (calculated)

34748.3 Da

IEP (calculated)

8.598

GRAVY (calculated)

-0.088

Length

322 amino acids

Sequence
(BLAST)

001: MWFWGSKGAS GFSSSSTAED VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTVSGAKVK QDILNQVPGA KLDVMELDLS SIESVRRFAS
101: DYKSTGLPLN ILINNAGVMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDVS SYSSISAYGQ
201: SKLCNVLHAN ELARQLKEDG VNITVNSLHP GAIMTSLWRH FNSYLAGAVS ALASYFIKTV PQGAATTCYL ALSPQVAGVT GEYFRNCKIT KPSSFGQDSE
301: LAKKVWDFST KLTDSHSGES HS

Best Arabidopsis Sequence Match ( AT4G23430.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS

Arabidopsis Description

TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.