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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d029840_P003 Maize plastid 93.02 87.72
EER91987 Sorghum plastid 86.35 86.9
OQU92191 Sorghum plastid 81.27 81.79
TraesCS1B01G221200.1 Wheat cytosol 81.59 81.59
TraesCS1A01G207500.1 Wheat cytosol 80.32 80.32
TraesCS1D01G210800.1 Wheat plastid 79.68 78.93
Os10t0547900-01 Rice cytosol 76.19 76.43
Os10t0548000-02 Rice cytosol, peroxisome, plastid 73.33 72.41
GSMUA_Achr2P18620_001 Banana plastid 66.03 65.82
VIT_16s0050g00760.t01 Wine grape plastid 64.13 64.54
PGSC0003DMT400040848 Potato plastid 63.49 63.9
Solyc03g025370.2.1 Tomato cytosol, nucleus, plastid 62.86 63.26
KRG91556 Soybean cytosol 62.86 63.26
VIT_02s0025g03380.t01 Wine grape cytosol 62.86 62.86
PGSC0003DMT400040845 Potato cytosol 61.59 61.98
PGSC0003DMT400032133 Potato cytosol 61.59 61.59
KRH59919 Soybean cytosol, plastid 61.59 61.59
Solyc03g025410.2.1 Tomato nucleus 60.95 61.34
Solyc08g081200.2.1 Tomato cytosol 61.27 61.27
KRH41194 Soybean cytosol, plastid 61.27 61.27
Solyc03g025390.2.1 Tomato cytosol 60.32 60.7
PGSC0003DMT400085601 Potato plastid 30.79 60.25
CDY13264 Canola cytosol 60.32 59.94
CDX86777 Canola cytosol 60.32 59.94
Bra035220.1-P Field mustard cytosol 60.32 59.94
KRH08894 Soybean plastid 41.27 59.91
KRH08897 Soybean cytosol, mitochondrion 59.68 59.87
PGSC0003DMT400040847 Potato cytosol 59.37 59.74
KRH38419 Soybean plastid 60.32 59.56
EER96376 Sorghum mitochondrion, plastid 59.68 59.49
Solyc08g008060.1.1 Tomato cytosol 59.37 59.37
AT4G11410.1 Thale cress cytosol, mitochondrion 59.68 59.31
PGSC0003DMT400014810 Potato mitochondrion 45.71 58.78
KRH08898 Soybean cytosol 58.73 58.54
Solyc03g025400.2.1 Tomato cytosol 58.73 58.54
KRH38432 Soybean cytosol 58.73 57.99
Bra020819.1-P Field mustard cytosol, plastid 59.05 57.76
CDX76338 Canola cytosol, plastid 59.05 57.76
CDY10884 Canola plastid 59.05 57.76
AT4G23430.2 Thale cress plastid 58.73 57.45
Bra013690.1-P Field mustard plastid 59.05 57.41
EES02479 Sorghum cytosol, plastid 57.78 56.88
KRH38426 Soybean cytosol 58.41 56.44
KRH38433 Soybean cytosol 57.14 56.43
KRG91557 Soybean cytosol 36.51 55.29
CDY69917 Canola endoplasmic reticulum 53.02 54.75
KRH35271 Soybean plastid 60.63 54.73
KRH38431 Soybean plastid 55.87 54.49
KRH35274 Soybean cytosol, mitochondrion, plastid 61.9 54.32
AT4G23420.3 Thale cress plastid 56.83 53.75
CDY44096 Canola mitochondrion, plastid 59.37 51.8
KRH08895 Soybean cytosol 58.41 48.17
EES08101 Sorghum cytosol 52.06 44.69
EER87765 Sorghum mitochondrion 47.3 41.39
OQU93381 Sorghum mitochondrion 45.4 40.28
VIT_16s0050g00750.t01 Wine grape plastid 66.67 33.6
EES11656 Sorghum plastid 32.38 26.49
EER94008 Sorghum plastid 29.84 23.86
EES04360 Sorghum cytosol 30.16 22.46
Protein Annotations
Gene3D:3.40.50.720MapMan:35.1EntrezGene:8058770UniProt:C5WTF5ProteinID:EER91989.1GO:GO:0003674
GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0055114InterPro:NAD(P)-bd_dom_sf
EnsemblPlants:OQU92195ProteinID:OQU92195ProteinID:OQU92195.1PFAM:PF00106PRINTS:PR00081PANTHER:PTHR24320
PANTHER:PTHR24320:SF146InterPro:SDR_famEnsemblPlantsGene:SORBI_3001G307600SUPFAM:SSF51735UniParc:UPI0001A82599RefSeq:XP_002464991.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:+:59296951..59299415
Molecular Weight (calculated)
33759.7 Da
IEP (calculated)
8.414
GRAVY (calculated)
0.137
Length
315 amino acids
Sequence
(BLAST)
001: MGWFSRKGPS GFSGASTAEE VTAGIDGHGL VAVITGASSG IGLETARVLA LRGVHVVMAV RNVSAGLEAR EAIVAKIPGA RIDVLELDLS SIASVRRFAS
101: HFDSLNLPLN ILINNAGVMT RNCTRSCDGL ELHFATNHIG HFLLTNLLLE NMKKTCRDSC IEGRIVNLTS SGHSITYREG ICFDKIHDPS GLNDFVAYGQ
201: SKLANILHSN ELSRILKEEG VNISANAVHP GVITTNLFRN RTIVSALLNS IGRIICRTVE QGAATTCYVA MHPQVKGISG KYFTNCDIAI PSSQASDAEL
301: AKKLWQFSLK TIVSS
Best Arabidopsis Sequence Match ( AT4G11410.1 )
(BLAST)
001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LDY7]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.