CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU81934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	OQU81934	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045495_P001	Maize	mitochondrion	89.72	89.47
Os06t0129100-01	Rice	mitochondrion	79.72	81.3
TraesCS7A01G061000.1	Wheat	mitochondrion, plastid	76.11	77.18
HORVU7Hr1G011180.12	Barley	plastid	75.83	76.04
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	76.39	75.97
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	74.17	74.37
GSMUA_Achr8P11870_001	Banana	cytosol	67.5	71.47
VIT_02s0025g02190.t01	Wine grape	cytosol	62.5	66.96
KRH41377	Soybean	cytosol	61.94	66.17
CDY53896	Canola	plastid	36.67	66.0
OQU93381	Sorghum	mitochondrion	65.0	65.92
GSMUA_Achr11P...	Banana	cytosol	62.22	64.93
PGSC0003DMT400031933	Potato	cytosol	60.0	64.09
Solyc08g082870.2.1	Tomato	cytosol	59.72	63.8
AT4G24050.1	Thale cress	cytosol	58.61	63.55
Bra019248.1-P	Field mustard	cytosol	58.61	63.55
AT1G64590.1	Thale cress	plastid	58.61	63.17
Bra013757.1-P	Field mustard	cytosol	58.06	62.95
Bra027706.1-P	Field mustard	plastid	60.0	62.43
CDY72311	Canola	cytosol	35.0	62.38
CDY10985	Canola	cytosol	57.5	62.35
CDX76323	Canola	cytosol	57.22	62.05
CDY53433	Canola	plastid	59.72	61.78
Bra027725.1-P	Field mustard	plastid	60.28	61.3
CDY72089	Canola	cytosol	34.17	61.19
CDY50440	Canola	mitochondrion	56.94	60.47
EER96376	Sorghum	mitochondrion, plastid	43.61	49.68
EES02479	Sorghum	cytosol, plastid	43.89	49.38
OQU92195	Sorghum	cytosol	41.39	47.3
EER91987	Sorghum	plastid	41.11	47.28
OQU92191	Sorghum	plastid	40.83	46.96
EES08101	Sorghum	cytosol	43.89	43.05
CDY08387	Canola	cytosol, nucleus, plastid	60.28	24.35
CDY47833	Canola	cytosol, nucleus, plastid	60.28	24.35
EES11656	Sorghum	plastid	25.56	23.9
EER94008	Sorghum	plastid	26.11	23.86
EES04360	Sorghum	cytosol	24.44	20.8
Bra027724.1-P	Field mustard	cytosol, plastid	0.28	0.18

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EntrezGene:8069048	UniProt:C5Z385	EnsemblPlants:EER87765	ProteinID:EER87765
ProteinID:EER87765.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	PANTHER:PTHR24320
PANTHER:PTHR24320:SF147	InterPro:SDR_fam	EnsemblPlantsGene:SORBI_3010G018600	SUPFAM:SSF51735	UniParc:UPI0001A88E90	RefSeq:XP_002436398.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:1542248..1544495

Molecular Weight (calculated)

38473.2 Da

IEP (calculated)

9.971

GRAVY (calculated)

0.054

Length

360 amino acids

Sequence
(BLAST)

001: MLTSLRYLAG TAGPSGFGSR TTAEEATAAG RDLAHITAII TGATSGIGAE TARVLASRGA RLVLPARSLK AAEEARARVR ADCPGADVTV LPLDLSSLAS
101: VRRFVKRFLH LGLPLNLLVN NAGKYADRFA VSEDGVEMTF ATNYLGHFLL TRLLLDKMAE TARDTGVEGR IVNVSSTIHS WFPADDDALA YLDRVTRRKI
201: QYDPTKAYAL SKLANVLHTR ALADRLKEMG ANVTANCVHP GIVRTRLIRD RDGLITNTVF FLASKLLKTI PQAAATTCYV AVHPAVAGVS GKYFADCNEA
301: SPSRLGASSE EASRLWTFSE NITAEKVQKT TSSVHVVSTG LFGLQAQSSI VPNRAMALAA

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.