Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24050.1 | CDX96624 | AT1G20770.1 | 21798944 |
| AT4G24050.1 | CDY01355 | AT1G20770.1 | 21798944 |
| AT4G24050.1 | CDY31868 | AT1G20770.1 | 21798944 |
| AT4G24050.1 | CDY33645 | AT1G20770.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10985 | Canola | cytosol | 97.89 | 97.89 |
| CDY72089 | Canola | cytosol | 59.04 | 97.51 |
| Bra019248.1-P | Field mustard | cytosol | 95.48 | 95.48 |
| CDY72311 | Canola | cytosol | 57.83 | 95.05 |
| CDY50440 | Canola | mitochondrion | 96.69 | 94.69 |
| AT4G24050.1 | Thale cress | cytosol | 91.57 | 91.57 |
| Solyc08g082870.2.1 | Tomato | cytosol | 75.6 | 74.48 |
| KRH41377 | Soybean | cytosol | 75.3 | 74.18 |
| PGSC0003DMT400031933 | Potato | cytosol | 75.0 | 73.89 |
| CDY53896 | Canola | plastid | 44.28 | 73.5 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 74.1 | 73.21 |
| CDY53433 | Canola | plastid | 73.19 | 69.83 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 67.77 | 66.18 |
| TraesCS5A01G527400.1 | Wheat | mitochondrion | 64.46 | 64.26 |
| TraesCS4B01G358400.1 | Wheat | mitochondrion | 64.46 | 64.26 |
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 64.46 | 64.07 |
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 63.86 | 63.66 |
| GSMUA_Achr11P... | Banana | cytosol | 65.96 | 63.48 |
| Os03t0115700-01 | Rice | mitochondrion | 63.25 | 63.25 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 64.46 | 62.94 |
| TraesCS4B01G358500.1 | Wheat | mitochondrion | 64.46 | 62.21 |
| HORVU4Hr1G086380.1 | Barley | mitochondrion, plastid | 64.16 | 61.56 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 64.16 | 60.51 |
| Os06t0129100-01 | Rice | mitochondrion | 62.95 | 59.21 |
| OQU93381 | Sorghum | mitochondrion | 62.95 | 58.87 |
| TraesCS4B01G358300.1 | Wheat | plastid | 55.12 | 58.65 |
| Zm00001d045495_P001 | Maize | mitochondrion | 62.95 | 57.89 |
| Zm00001d027353_P001 | Maize | mitochondrion | 62.65 | 57.62 |
| EER87765 | Sorghum | mitochondrion | 62.05 | 57.22 |
| HORVU7Hr1G011180.12 | Barley | plastid | 61.14 | 56.55 |
| TraesCS7A01G061000.1 | Wheat | mitochondrion, plastid | 59.94 | 56.06 |
| TraesCS4A01G428800.1 | Wheat | mitochondrion, plastid | 59.94 | 55.43 |
| TraesCS7D01G055800.1 | Wheat | mitochondrion, plastid | 60.24 | 55.25 |
| CDY18436 | Canola | cytosol | 49.1 | 50.78 |
| CDY52816 | Canola | cytosol | 48.49 | 50.31 |
| CDX81232 | Canola | cytosol | 48.49 | 50.16 |
| CDX74954 | Canola | cytosol | 48.19 | 50.0 |
| CDY52817 | Canola | cytosol | 47.89 | 49.69 |
| CDX88292 | Canola | cytosol | 23.49 | 49.68 |
| CDY10440 | Canola | plastid | 46.99 | 48.0 |
| CDY40365 | Canola | mitochondrion | 47.29 | 47.43 |
| CDY11217 | Canola | mitochondrion | 46.39 | 46.53 |
| CDY10441 | Canola | cytosol, extracellular, mitochondrion, plastid | 18.98 | 45.99 |
| CDY68648 | Canola | cytosol | 28.01 | 44.5 |
| CDY55418 | Canola | cytosol | 40.06 | 44.48 |
| CDX86777 | Canola | cytosol | 42.47 | 44.48 |
| CDY13264 | Canola | cytosol | 42.47 | 44.48 |
| CDY10884 | Canola | plastid | 42.77 | 44.1 |
| CDX76338 | Canola | cytosol, plastid | 42.47 | 43.79 |
| CDY69917 | Canola | endoplasmic reticulum | 38.86 | 42.3 |
| CDX71585 | Canola | mitochondrion | 40.96 | 40.12 |
| CDY44096 | Canola | mitochondrion, plastid | 42.77 | 39.34 |
| CDY70072 | Canola | cytosol | 14.76 | 29.34 |
| CDX92838 | Canola | cytosol | 26.51 | 27.5 |
| CDY37755 | Canola | mitochondrion, plastid | 50.9 | 27.13 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 72.29 | 26.94 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 71.99 | 26.82 |
| CDY19025 | Canola | cytosol | 29.52 | 26.27 |
| CDX89228 | Canola | cytosol, nucleus, peroxisome | 29.52 | 26.27 |
| CDY29859 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 26.81 | 24.32 |
| CDY18175 | Canola | plastid | 28.61 | 23.75 |
| CDX89877 | Canola | plastid | 28.61 | 23.75 |
| CDY29311 | Canola | plastid | 28.31 | 23.68 |
| CDX89249 | Canola | plastid | 28.31 | 23.68 |
| CDY15470 | Canola | plastid | 28.31 | 23.62 |
| CDY51384 | Canola | plastid | 28.31 | 23.62 |
| CDY64354 | Canola | cytosol | 15.66 | 22.91 |
| CDY14325 | Canola | plastid | 27.71 | 22.77 |
| CDY18309 | Canola | plastid | 23.19 | 22.06 |
| CDX98171 | Canola | plastid | 22.89 | 21.78 |
| CDY27027 | Canola | golgi, mitochondrion, nucleus | 28.61 | 21.21 |
| CDX96191 | Canola | mitochondrion | 27.71 | 20.91 |
| CDY29840 | Canola | plastid | 28.61 | 15.01 |
| CDX92832 | Canola | plastid | 28.61 | 14.91 |
| CDY38726 | Canola | cytosol, golgi, plastid | 29.52 | 11.78 |
Protein Annotations
| EnsemblPlants:CDX76323 | EnsemblPlantsGene:GSBRNA2T00126696001 | Gene3D:3.40.50.720 | GO:A0A078CML0 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR24320 | PANTHER:PTHR24320:SF114 | PFAM:PF00106 | PRINTS:PR00081 | ProteinID:CDX76323 | ProteinID:CDX76323.1 |
| SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0004EE688F | MapMan:35.1 | : | : |
Description
BnaA08g10770D
Coordinates
chrLK031807:+:358562..360932
Molecular Weight (calculated)
35890.1 Da
IEP (calculated)
8.224
GRAVY (calculated)
0.001
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDTGRYLIG AAGVSGFGSK STADEVTENC DLRSTTAIIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEQAKGRIVS EFPETEIVVM ELDLSSMSSV
101: RSFVAGFESL HLPLNFLINN AGRLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLKKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR QISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV KTRLTRDREG LMTDLVFFLT SKLLKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGSNSSEAT KLWAASEILV TQHPKAAFDP FS
101: RSFVAGFESL HLPLNFLINN AGRLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLKKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR QISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV KTRLTRDREG LMTDLVFFLT SKLLKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGSNSSEAT KLWAASEILV TQHPKAAFDP FS
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.