Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 91.19 | 94.41 |
| TraesCS4D01G351800.1 | Wheat | mitochondrion | 88.64 | 93.41 |
| TraesCS4B01G358200.1 | Wheat | mitochondrion, plastid | 87.78 | 92.79 |
| HORVU4Hr1G086380.1 | Barley | mitochondrion, plastid | 88.35 | 89.88 |
| Os03t0115700-01 | Rice | mitochondrion | 80.11 | 84.94 |
| TraesCS4B01G358300.1 | Wheat | plastid | 73.86 | 83.33 |
| OQU93381 | Sorghum | mitochondrion | 80.4 | 79.72 |
| Zm00001d027353_P001 | Maize | mitochondrion | 80.4 | 78.39 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 69.6 | 72.06 |
| KRH41377 | Soybean | cytosol | 66.19 | 69.14 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 65.91 | 69.05 |
| CDY53896 | Canola | plastid | 39.2 | 69.0 |
| PGSC0003DMT400031933 | Potato | cytosol | 65.06 | 67.95 |
| Solyc08g082870.2.1 | Tomato | cytosol | 64.77 | 67.66 |
| GSMUA_Achr11P... | Banana | cytosol | 65.34 | 66.67 |
| AT4G24050.1 | Thale cress | cytosol | 61.93 | 65.66 |
| Bra019248.1-P | Field mustard | cytosol | 61.65 | 65.36 |
| CDY72311 | Canola | cytosol | 37.5 | 65.35 |
| CDY72089 | Canola | cytosol | 36.93 | 64.68 |
| CDY10985 | Canola | cytosol | 60.51 | 64.16 |
| Bra013757.1-P | Field mustard | cytosol | 60.51 | 64.16 |
| CDX76323 | Canola | cytosol | 60.51 | 64.16 |
| AT1G64590.1 | Thale cress | plastid | 60.8 | 64.07 |
| Bra027706.1-P | Field mustard | plastid | 61.65 | 62.72 |
| CDY50440 | Canola | mitochondrion | 60.23 | 62.54 |
| CDY53433 | Canola | plastid | 61.36 | 62.07 |
| TraesCS7D01G055800.1 | Wheat | mitochondrion, plastid | 63.64 | 61.88 |
| Bra027725.1-P | Field mustard | plastid | 61.36 | 61.02 |
| TraesCS5D01G287000.1 | Wheat | plastid | 44.32 | 48.45 |
| TraesCS4D01G003200.1 | Wheat | golgi | 42.61 | 47.47 |
| TraesCS4D01G002700.2 | Wheat | mitochondrion, plastid | 42.05 | 46.98 |
| TraesCS4D01G093500.1 | Wheat | mitochondrion | 42.33 | 46.13 |
| TraesCS1D01G210800.1 | Wheat | plastid | 40.91 | 45.28 |
| TraesCS4D01G003400.2 | Wheat | mitochondrion | 40.62 | 44.41 |
| TraesCS3D01G077500.2 | Wheat | cytosol, plastid | 40.06 | 40.29 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 61.93 | 24.47 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 61.65 | 24.35 |
| TraesCS6D01G051500.1 | Wheat | cytosol | 27.56 | 23.72 |
| TraesCS2D01G563700.1 | Wheat | cytosol | 16.19 | 23.65 |
| TraesCS2D01G563600.1 | Wheat | golgi, plastid | 24.72 | 22.42 |
| TraesCS1D01G168700.2 | Wheat | plastid | 25.0 | 21.1 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.57 | 0.37 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G351700.1 | EnsemblPlantsGene:TraesCS4D01G351700 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR24320 |
| PANTHER:PTHR24320:SF114 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:503450807..503452203
Molecular Weight (calculated)
37462.1 Da
IEP (calculated)
8.481
GRAVY (calculated)
0.098
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQAARYLLG SPGASGFGSK TTAEEVTAAC PDLGSLTAII TGATSGIGAE TARVLAKRGA RVVMPARSVK AAEDMRARIL GECPGADVLV LHLDLSSLAS
101: VRDFARRFLS LGLPLHLLIN NAGKFSHGQL ALSEDGVEMT FATNYLGHFL LTKLLLGRMA ETAAATGVQG RIVNVSSSVH GWFSGDWADY LQLVTRRKIP
201: YDATRAYAVS KLANLLHTKE LAARLQEMGA DVTVNCVHPG IVRTRLNRDR EGLITDLVFV LLSKLLKTIP QAAATTCYAA VHPRLAGVSD RYLADCNEAL
301: PSPAAASRSE AARLWQASED MISGSSQQGQ VLQYGCWTGT SEHPTTLCPS TV
101: VRDFARRFLS LGLPLHLLIN NAGKFSHGQL ALSEDGVEMT FATNYLGHFL LTKLLLGRMA ETAAATGVQG RIVNVSSSVH GWFSGDWADY LQLVTRRKIP
201: YDATRAYAVS KLANLLHTKE LAARLQEMGA DVTVNCVHPG IVRTRLNRDR EGLITDLVFV LLSKLLKTIP QAAATTCYAA VHPRLAGVSD RYLADCNEAL
301: PSPAAASRSE AARLWQASED MISGSSQQGQ VLQYGCWTGT SEHPTTLCPS TV
001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS
Arabidopsis Description
AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.