Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G358400.1 | Wheat | mitochondrion | 94.59 | 94.59 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 95.8 | 93.82 |
| TraesCS4B01G358500.1 | Wheat | mitochondrion | 96.1 | 93.02 |
| HORVU4Hr1G086380.1 | Barley | mitochondrion, plastid | 93.39 | 89.88 |
| TraesCS4D01G351700.1 | Wheat | mitochondrion, plastid | 92.79 | 87.78 |
| TraesCS4B01G358300.1 | Wheat | plastid | 79.28 | 84.62 |
| Os03t0115700-01 | Rice | mitochondrion | 84.08 | 84.34 |
| OQU93381 | Sorghum | mitochondrion | 84.68 | 79.44 |
| Zm00001d027353_P001 | Maize | mitochondrion | 83.78 | 77.29 |
| GSMUA_Achr8P11870_001 | Banana | cytosol | 73.87 | 72.35 |
| VIT_02s0025g02190.t01 | Wine grape | cytosol | 69.97 | 69.35 |
| CDY53896 | Canola | plastid | 41.44 | 69.0 |
| KRH41377 | Soybean | cytosol | 69.07 | 68.25 |
| PGSC0003DMT400031933 | Potato | cytosol | 69.07 | 68.25 |
| Solyc08g082870.2.1 | Tomato | cytosol | 68.77 | 67.95 |
| GSMUA_Achr11P... | Banana | cytosol | 68.47 | 66.09 |
| CDY72311 | Canola | cytosol | 39.94 | 65.84 |
| Bra019248.1-P | Field mustard | cytosol | 65.17 | 65.36 |
| CDY72089 | Canola | cytosol | 39.34 | 65.17 |
| AT4G24050.1 | Thale cress | cytosol | 64.86 | 65.06 |
| AT1G64590.1 | Thale cress | plastid | 64.56 | 64.37 |
| CDY10985 | Canola | cytosol | 63.96 | 64.16 |
| CDX76323 | Canola | cytosol | 63.66 | 63.86 |
| Bra013757.1-P | Field mustard | cytosol | 63.66 | 63.86 |
| CDY50440 | Canola | mitochondrion | 63.66 | 62.54 |
| Bra027706.1-P | Field mustard | plastid | 64.86 | 62.43 |
| CDY53433 | Canola | plastid | 65.17 | 62.36 |
| Bra027725.1-P | Field mustard | plastid | 64.26 | 60.45 |
| TraesCS5B01G461100.1 | Wheat | mitochondrion, plastid | 18.62 | 53.91 |
| TraesCS3B01G220800.1 | Wheat | mitochondrion, plastid | 18.62 | 53.91 |
| TraesCS3B01G091800.3 | Wheat | cytosol | 47.45 | 49.38 |
| TraesCS5B01G279400.1 | Wheat | plastid | 47.45 | 49.07 |
| TraesCS4B01G003400.1 | Wheat | plastid | 44.74 | 47.3 |
| TraesCS4B01G002900.1 | Wheat | golgi | 44.14 | 46.52 |
| TraesCS4B01G097100.1 | Wheat | mitochondrion | 45.05 | 46.44 |
| TraesCS1B01G221200.1 | Wheat | cytosol | 43.84 | 46.35 |
| CDY47833 | Canola | cytosol, nucleus, plastid | 63.96 | 23.91 |
| CDY08387 | Canola | cytosol, nucleus, plastid | 63.66 | 23.79 |
| TraesCS6B01G060600.1 | Wheat | cytosol | 29.13 | 23.6 |
| TraesCS2B01G593000.1 | Wheat | plastid | 26.73 | 22.94 |
| TraesCS1B01G186300.1 | Wheat | plastid | 26.13 | 22.03 |
| Bra027724.1-P | Field mustard | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G358200.1 | EnsemblPlantsGene:TraesCS4B01G358200 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR24320 |
| PANTHER:PTHR24320:SF114 | PFAM:PF00106 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:648572462..648573951
Molecular Weight (calculated)
35597.9 Da
IEP (calculated)
9.000
GRAVY (calculated)
0.114
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQAARYLLG SSGASGFGSK STADEVTAAC PDLCSLTAII TGATSGIGAE TARVLAKRGA RVVIPARSVK AAEDMRARIL AECPGADVLV LHLDLSSLAS
101: VRDFARRFLS LGLPLHLLIN NAGKFSHGQL ALSEDGVEMT FATNYLGHFL LTKLLLGRMA ETTASTGVQG RIVNVSSSVH GWFSGDWADY LQLVTRRKIP
201: YDATQAYAVS KLANVLHTKE LAARLQEMGA DVTVNCVHPG IVRTRLNRDR EGLVTEFVFV LLSKLLKTIP QAAATTCYAA VHPRLAGVSG RYLADCNEAV
301: PSPAAASRRE AARLWQASED MIYASSSQPD RNI
101: VRDFARRFLS LGLPLHLLIN NAGKFSHGQL ALSEDGVEMT FATNYLGHFL LTKLLLGRMA ETTASTGVQG RIVNVSSSVH GWFSGDWADY LQLVTRRKIP
201: YDATQAYAVS KLANVLHTKE LAARLQEMGA DVTVNCVHPG IVRTRLNRDR EGLVTEFVFV LLSKLLKTIP QAAATTCYAA VHPRLAGVSG RYLADCNEAV
301: PSPAAASRRE AARLWQASED MIYASSSQPD RNI
001: MIETVKHLIG SGGPSGFGSR STADHVTCNS DLRSLTAIIT GATSGIGAET ARVLAKRGAR LVLPARSVKT AEETKARILS EFPDAEIIVM HLDLSSLTSV
101: RRFVDDFESL NLPLNILINN AGKYAHKHAL SEDGVEMTFA TNYLGHFLLT KLLLKKMIET AAQTGVQGRI VNVTSVVHSW FSGDMLQYLA DISRNNRNYD
201: ATRAYALSKL ANVLHTVELS RLLHKMDANV TANCVHPGIV KTRLTRDREG VVTDLVFFLT SKLLKSVPQA AATTCYVATS PRLRNVCGKY FSDCNEARSS
301: KSGSCNLKAQ RLWTASDLLV SPPNSTTNLS HTSF
101: RRFVDDFESL NLPLNILINN AGKYAHKHAL SEDGVEMTFA TNYLGHFLLT KLLLKKMIET AAQTGVQGRI VNVTSVVHSW FSGDMLQYLA DISRNNRNYD
201: ATRAYALSKL ANVLHTVELS RLLHKMDANV TANCVHPGIV KTRLTRDREG VVTDLVFFLT SKLLKSVPQA AATTCYVATS PRLRNVCGKY FSDCNEARSS
301: KSGSCNLKAQ RLWTASDLLV SPPNSTTNLS HTSF
Arabidopsis Description
At1g64590/F1N19_15 [Source:UniProtKB/TrEMBL;Acc:Q9SGV6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.