Factsheet for VIT_02s0025g02190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0122g01060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	VIT_18s0122g01060.t01	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031933	Potato	cytosol	81.55	81.31
Solyc08g082870.2.1	Tomato	cytosol	80.06	79.82
KRH41377	Soybean	cytosol	77.98	77.74
AT4G24050.1	Thale cress	cytosol	75.6	76.51
Bra019248.1-P	Field mustard	cytosol	74.4	75.3
CDY72311	Canola	cytosol	44.94	74.75
CDY72089	Canola	cytosol	44.64	74.63
CDY53896	Canola	plastid	44.35	74.5
CDY10985	Canola	cytosol	73.51	74.4
CDX76323	Canola	cytosol	73.21	74.1
Bra013757.1-P	Field mustard	cytosol	73.21	74.1
GSMUA_Achr8P11870_001	Banana	cytosol	73.81	72.94
CDY50440	Canola	mitochondrion	72.62	71.98
TraesCS4D01G351800.1	Wheat	mitochondrion	71.13	71.56
TraesCS4B01G358400.1	Wheat	mitochondrion	70.24	70.87
Os03t0115700-01	Rice	mitochondrion	69.94	70.78
AT1G64590.1	Thale cress	plastid	70.24	70.66
TraesCS5A01G527400.1	Wheat	mitochondrion	69.64	70.27
Bra027706.1-P	Field mustard	plastid	72.32	70.23
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	69.35	69.97
TraesCS4B01G358500.1	Wheat	mitochondrion	71.43	69.77
CDY53433	Canola	plastid	72.02	69.54
TraesCS5A01G527300.1	Wheat	mitochondrion	69.64	68.82
GSMUA_Achr11P...	Banana	cytosol	70.54	68.7
Bra027725.1-P	Field mustard	plastid	71.43	67.8
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	69.35	67.34
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	69.05	65.91
OQU93381	Sorghum	mitochondrion	68.75	65.07
Os06t0129100-01	Rice	mitochondrion	68.15	64.87
TraesCS4B01G358300.1	Wheat	plastid	59.52	64.1
Zm00001d027353_P001	Maize	mitochondrion	68.15	63.43
EER87765	Sorghum	mitochondrion	66.96	62.5
Zm00001d045495_P001	Maize	mitochondrion	66.67	62.05
HORVU7Hr1G011180.12	Barley	plastid	65.48	61.28
TraesCS7A01G061000.1	Wheat	mitochondrion, plastid	63.99	60.56
TraesCS4A01G428800.1	Wheat	mitochondrion, plastid	63.39	59.33
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	63.69	59.12
VIT_17s0000g08920.t01	Wine grape	cytosol	54.46	55.45
VIT_16s0050g00760.t01	Wine grape	plastid	44.35	47.6
VIT_08s0040g03400.t01	Wine grape	plastid	45.83	47.53
VIT_02s0025g03380.t01	Wine grape	cytosol	43.75	46.67
VIT_17s0000g00520.t01	Wine grape	cytosol, mitochondrion, peroxisome	31.25	28.3
CDY08387	Canola	cytosol, nucleus, plastid	71.43	26.94
CDY47833	Canola	cytosol, nucleus, plastid	71.43	26.94
VIT_16s0050g00750.t01	Wine grape	plastid	43.75	23.52
VIT_19s0014g03160.t01	Wine grape	plastid	27.38	23.23
VIT_12s0059g00270.t01	Wine grape	plastid	27.38	23.06
Bra027724.1-P	Field mustard	cytosol, plastid	0.6	0.37

Protein Annotations

EntrezGene:100261623	wikigene:100261623	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CBI34551	ProteinID:CBI34551.3
UniProt:D7TVM6	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100261623	wikigene:LOC100261623	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	PANTHER:PTHR24320	PANTHER:PTHR24320:SF114	InterPro:SDR_fam	SUPFAM:SSF51735
TIGR:TC70217	UniParc:UPI00015CD0A5	ArrayExpress:VIT_02s0025g02190	EnsemblPlantsGene:VIT_02s0025g02190	EnsemblPlants:VIT_02s0025g02190.t01	unigene:Vvi.5943
RefSeq:XP_002262981	RefSeq:XP_002262981.1	:	:	:	:

Description

No Description!

Coordinates

chr2:+:1944134..1946279

Molecular Weight (calculated)

36561.8 Da

IEP (calculated)

7.910

GRAVY (calculated)

0.007

Length

336 amino acids

Sequence
(BLAST)

001: MLDALKYLLG SFGASGYGSK STAEEVTENC PDLGSVTAVI TGATSGIGAE TARVLAKRGA RLVLPARSLK AAEEAKARIV AEFPNSEIVV MALDLSSLDS
101: VRCFVSEFES LDLPLNLLIN NAGKFTHEHA ISEDGIEMTF ATNYLGHFLL TKLLLNKMIE TAKKTGVQGR IVNVSSTIHS WFSGDVIRYL GLITRNKSQY
201: DATRAYAVSK LANVLHTKEL AQRLKQMDAN VTVNCVHPGI VRTRLTRETE GIVTDLIFFL TSKFLKTIPQ AAATTCYVAT HPRLVNVSGK YFADCNEAWT
301: SKLGSNSQEA SRLWSASEIM TARDSRAIFD PLDASD

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.