Factsheet for VIT_12s0059g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_04s0008g01350.t01
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_10s0003g01830.t01
VIT_12s0059g00270.t01
VIT_15s0048g00220.t01
VIT_19s0014g03160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	VIT_12s0059g00270.t01	AT1G03630.1	21798944
AT1G03630.1	VIT_19s0014g03160.t01	AT1G03630.1	21798944
AT1G03630.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G03630.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT1G03630.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT1G03630.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G03630.1	VIT_12s0059g00270.t01	AT4G27440.1	21798944
AT1G03630.1	VIT_19s0014g03160.t01	AT4G27440.1	21798944
AT1G03630.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944
AT1G03630.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03160.t01	Wine grape	plastid	84.21	84.85
PGSC0003DMT400047264	Potato	plastid	82.71	82.91
Solyc07g054210.2.1	Tomato	plastid	82.46	82.46
CDX89249	Canola	plastid	80.95	81.36
CDY29311	Canola	plastid	80.7	81.11
AT1G03630.1	Thale cress	plastid	81.45	81.05
Bra026349.1-P	Field mustard	plastid	78.45	80.67
CDY51384	Canola	plastid	79.95	80.15
Bra033415.1-P	Field mustard	plastid	80.2	80.0
CDX89877	Canola	plastid	80.2	80.0
CDY18175	Canola	plastid	80.2	80.0
Bra030540.1-P	Field mustard	plastid	79.7	79.9
CDY15470	Canola	plastid	79.7	79.9
TraesCS2D01G563700.1	Wheat	cytosol	47.87	79.25
Zm00001d032576_P001	Maize	plastid	78.2	78.79
Bra019049.1-P	Field mustard	plastid	78.45	78.64
EER94008	Sorghum	plastid	77.44	78.43
AT4G27440.1	Thale cress	plastid	78.45	78.05
Zm00001d013937_P001	Maize	plastid	77.44	78.03
AT5G54190.1	Thale cress	plastid	79.2	78.02
Bra003004.1-P	Field mustard	plastid	78.45	77.67
GSMUA_Achr11P...	Banana	plastid	76.69	77.27
GSMUA_Achr3P14270_001	Banana	plastid	74.94	77.26
CDY14325	Canola	plastid	78.2	77.23
HORVU1Hr1G044680.1	Barley	plastid	76.44	77.22
CDX98171	Canola	plastid	67.42	77.08
CDY18309	Canola	plastid	67.17	76.79
TraesCS1B01G186300.1	Wheat	plastid	75.94	76.71
Os10t0496900-02	Rice	plastid	75.44	74.88
Os04t0678700-01	Rice	plastid	72.43	74.68
EES11656	Sorghum	plastid	71.93	74.55
TraesCS2A01G590600.1	Wheat	plastid	71.68	73.71
GSMUA_Achr7P04280_001	Banana	plastid	73.43	73.62
TraesCS2B01G593000.1	Wheat	plastid	71.43	73.45
TraesCS2D01G563600.1	Wheat	golgi, plastid	71.43	73.45
TraesCS1D01G168700.2	Wheat	plastid	76.69	73.38
Zm00001d001820_P001	Maize	plastid	70.68	72.87
TraesCS1A01G171000.1	Wheat	golgi, plastid	75.94	72.66
HORVU4Hr1G073090.1	Barley	plastid	19.3	55.0
HORVU2Hr1G119050.2	Barley	mitochondrion	50.88	54.13
HORVU2Hr1G006120.3	Barley	plastid	16.54	54.1
HORVU5Hr1G104070.1	Barley	plastid	17.04	53.12
HORVU2Hr1G020490.1	Barley	plastid	20.8	51.23
CDX92832	Canola	plastid	78.95	49.45
CDY29840	Canola	plastid	77.94	49.13
VIT_16s0050g00760.t01	Wine grape	plastid	28.07	35.78
VIT_02s0025g03380.t01	Wine grape	cytosol	27.07	34.29
VIT_08s0040g03400.t01	Wine grape	plastid	27.82	34.26
VIT_17s0000g08920.t01	Wine grape	cytosol	23.06	27.88
VIT_02s0025g02190.t01	Wine grape	cytosol	23.06	27.38
VIT_17s0000g00520.t01	Wine grape	cytosol, mitochondrion, peroxisome	22.56	24.26
HORVU2Hr1G119090.2	Barley	plastid	23.06	21.75
VIT_16s0050g00750.t01	Wine grape	plastid	28.32	18.08

Protein Annotations

KEGG:00860+1.3.1.33	EntrezGene:100241491	wikigene:100241491	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	ProteinID:CBI28775
ProteinID:CBI28775.3	UniProt:D7TE52	EMBL:FN595765	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491
GO:GO:0016630	GO:GO:0055114	EntrezGene:LOC100241491	wikigene:LOC100241491	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF3	InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735
TIGR:TC56911	TIGRFAMs:TIGR01289	UniParc:UPI00015CA8D5	ArrayExpress:VIT_12s0059g00270	EnsemblPlantsGene:VIT_12s0059g00270	EnsemblPlants:VIT_12s0059g00270.t01
unigene:Vvi.14149	RefSeq:XP_002264000	RefSeq:XP_002264000.1	RefSeq:XP_002264042	RefSeq:XP_002264042.1	SEG:seg

Description

NADPH-protochlorophyllide oxidoreductase [Source:UniProtKB/TrEMBL;Acc:D7TE52]

Coordinates

chr12:-:5132816..5136194

Molecular Weight (calculated)

43342.1 Da

IEP (calculated)

9.835

GRAVY (calculated)

-0.219

Length

399 amino acids

Sequence
(BLAST)

001: MALQAASLLP SAVSIHKEGK SNASLKETGF FEVSVSDHLK AELSLGLSKN KELKRRKLPV GVIRAQTATT PAISQASPEG KKTLRKGNVI ITGASSGLGL
101: ATAKALAETE KWHIIMACRN FLKADRAAKS AGIAKENYTV MHLDLASLES VRQFADNFRR SGRPLDVLVC NAAVYLPTAK EPTFTAEGFE LSVGTNHLGH
201: FLLSRLLLDD LKQTDYPSKR LIIVGSITGN TNTLAGNVPP KANLGDLRGL AGGLNGINGS PMIDGGEFDG AKAYKDSKVC NMLTMQEFHR RYHEETGITF
301: ASLYPGCIAT TGLFREHIPL FRLLFPPFQK YITKGYVSEE EAGKRLAQVV TDPSLTKSGV YWSWNKNSAS FQNQLSQEAS DAEKARKVWE ISEKLVGLA

Best Arabidopsis Sequence Match ( AT1G03630.1 )
(BLAST)

001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A

Arabidopsis Description

PORCProtochlorophyllide reductase C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.