CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89249	Canola	plastid	59.97	96.22
CDY29840	Canola	plastid	95.45	96.05
CDY29311	Canola	plastid	59.65	95.72
AT4G27440.1	Thale cress	plastid	58.56	93.02
CDY14325	Canola	plastid	54.0	85.15
KRH27209	Soybean	nucleus, plastid	52.43	83.71
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	51.49	82.62
Solyc10g006900.2.1	Tomato	plastid	51.18	82.53
PGSC0003DMT400064369	Potato	plastid	51.49	82.41
PGSC0003DMT400039734	Potato	plastid	51.33	82.37
VIT_19s0014g03160.t01	Wine grape	plastid	50.86	81.82
CDX98171	Canola	plastid	44.58	81.38
CDY18309	Canola	plastid	44.43	81.09
KRH55334	Soybean	plastid	50.24	80.2
TraesCS2D01G563700.1	Wheat	cytosol	30.14	79.67
EER94008	Sorghum	plastid	49.14	79.44
Zm00001d013937_P001	Maize	plastid	49.29	79.29
VIT_12s0059g00270.t01	Wine grape	plastid	49.45	78.95
Zm00001d032576_P001	Maize	plastid	48.82	78.54
PGSC0003DMT400047264	Potato	plastid	48.51	77.64
GSMUA_Achr3P14270_001	Banana	plastid	46.94	77.26
CDY18175	Canola	plastid	48.35	77.0
Solyc07g054210.2.1	Tomato	plastid	48.19	76.94
KRH26074	Soybean	plastid	41.29	76.9
CDX89877	Canola	plastid	48.19	76.75
CDY15470	Canola	plastid	47.72	76.38
CDY51384	Canola	plastid	47.72	76.38
TraesCS1B01G186300.1	Wheat	plastid	47.1	75.95
HORVU1Hr1G044680.1	Barley	plastid	46.94	75.7
GSMUA_Achr11P...	Banana	plastid	46.94	75.51
Os10t0496900-02	Rice	plastid	47.25	74.88
Os04t0678700-01	Rice	plastid	45.21	74.42
TraesCS2A01G590600.1	Wheat	plastid	45.21	74.23
TraesCS2B01G593000.1	Wheat	plastid	45.21	74.23
TraesCS2D01G563600.1	Wheat	golgi, plastid	45.05	73.97
GSMUA_Achr7P04280_001	Banana	plastid	45.84	73.37
EES11656	Sorghum	plastid	43.8	72.47
TraesCS1A01G171000.1	Wheat	golgi, plastid	47.1	71.94
Zm00001d001820_P001	Maize	plastid	43.64	71.83
TraesCS1D01G168700.2	Wheat	plastid	46.94	71.7
HORVU4Hr1G073090.1	Barley	plastid	13.03	59.29
HORVU2Hr1G006120.3	Barley	plastid	11.3	59.02
HORVU5Hr1G104070.1	Barley	plastid	11.46	57.03
HORVU2Hr1G119050.2	Barley	mitochondrion	32.65	55.47
HORVU2Hr1G020490.1	Barley	plastid	13.97	54.94
CDY10884	Canola	plastid	17.11	33.85
CDX86777	Canola	cytosol	16.33	32.81
CDY13264	Canola	cytosol	16.33	32.81
CDX76338	Canola	cytosol, plastid	16.48	32.61
CDX88292	Canola	cytosol	8.01	32.48
CDX74954	Canola	cytosol	16.17	32.19
CDY69917	Canola	endoplasmic reticulum	15.38	32.13
CDY52817	Canola	cytosol	16.01	31.88
CDY52816	Canola	cytosol	16.01	31.88
CDX81232	Canola	cytosol	16.01	31.78
CDY18436	Canola	cytosol	15.86	31.46
CDY10440	Canola	plastid	15.86	31.08
CDY40365	Canola	mitochondrion	15.7	30.21
CDY44096	Canola	mitochondrion, plastid	16.95	29.92
CDY53896	Canola	plastid	9.26	29.5
CDY72089	Canola	cytosol	9.26	29.35
CDY11217	Canola	mitochondrion	15.23	29.31
CDY72311	Canola	cytosol	9.26	29.21
CDY55418	Canola	cytosol	13.5	28.76
CDY68648	Canola	cytosol	9.42	28.71
CDX76323	Canola	cytosol	14.91	28.61
CDY10985	Canola	cytosol	14.91	28.61
CDY53433	Canola	plastid	15.54	28.45
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	5.97	27.74
CDY50440	Canola	mitochondrion	14.76	27.73
CDX92838	Canola	cytosol	13.81	27.5
CDX89228	Canola	cytosol, nucleus, peroxisome	14.6	24.93
CDY19025	Canola	cytosol	14.44	24.66
CDY70072	Canola	cytosol	6.28	23.95
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	13.34	23.22
CDY64354	Canola	cytosol	8.01	22.47
HORVU2Hr1G119090.2	Barley	plastid	14.91	22.46
CDX71585	Canola	mitochondrion	11.77	22.12
CDY27027	Canola	golgi, mitochondrion, nucleus	13.5	19.2
CDX96191	Canola	mitochondrion	13.03	18.86
CDY37755	Canola	mitochondrion, plastid	14.29	14.61
CDY47833	Canola	cytosol, nucleus, plastid	16.64	11.9
CDY08387	Canola	cytosol, nucleus, plastid	16.48	11.78
CDY38726	Canola	cytosol, golgi, plastid	14.13	10.82

Protein Annotations

KEGG:00860+1.3.1.33	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	GO:A0A078DVB6
EnsemblPlants:CDX92832	ProteinID:CDX92832	ProteinID:CDX92832.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016630	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00154665001
InterPro:IPR001841	InterPro:IPR013083	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00097	PFAM:PF00106	PRINTS:PR00081
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR44419	PANTHER:PTHR44419:SF3	InterPro:Prochl_reduct	InterPro:SDR_fam
SMART:SM00184	SUPFAM:SSF51735	SUPFAM:SSF57850	TIGRFAMs:TIGR01289	TMHMM:TMhelix	UniPathway:UPA00668
UniParc:UPI0004EEBDC1	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

BnaC07g40900D

Coordinates

chrLK031873:+:1004301..1007640

Molecular Weight (calculated)

69609.1 Da

IEP (calculated)

8.561

GRAVY (calculated)

-0.153

Length

637 amino acids

Sequence
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASSSSFKE SSLFGASITE HGSFSFRFKR EHSSRNVLAV RAQTAATSSP SVTKSSSGGK KTLRKGTVVV TGASSGLGLA
101: TAKALAETGK WHVIMACRDF LKAERAAKSA GMPKDSYTVM HLDLASLDSV RQFVDSFRRS EMPLDVLVCN AAVYFPTAKE PTYSAEGFEL SVATNHLGHF
201: LLSRLLLDDL KKSDYPSKRL IIVGSITGNT NTLAGNVPPK ANLGDLRGLA GGLNGLNSSV MIDGGDFDGA KAYKDSKVCN MLTMQEFHRR YHEETGVTFA
301: SLYPGCIAST GLFREHIPLF RTLFPPFQKY ITKGYVSETE SGKRLAQVVS DPSLTKSGVY WSWNKASASF ENELSEEASD VEKARKVWEI SEKLVGTLPP
401: MEGSFLISDA QQAHEEVKQK PNLITGPAGS QANESGCFDC NICLETALDP VVTLCGHLFC WPCIYKWLHV QLSSLSTDHH RHNNCPVCKS NIAITSLVPL
501: YGRGISSPSL SFNSKEQDSE STVIPRRPSP STLNNPVTSL NPSLQHQTMS PTFHNHRYSP RGFTTTESTD LANAVMMSLL YPVIGMFGDM VYTRIFGTFT
601: NAIAQPYQSQ RMMQTDKSLN RVSLFFLCCI ILCLLLF

Best Arabidopsis Sequence Match ( AT4G27440.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDAK LNASSSSFKD SSLFGASITD QIKSEHGSSS LRFKREQSLR NLAIRAQTAA TSSPTVTKSV DGKKTLRKGN VVVTGASSGL
101: GLATAKALAE TGKWNVIMAC RDFLKAERAA KSVGMPKDSY TVMHLDLASL DSVRQFVDNF RRTETPLDVL VCNAAVYFPT AKEPTYSAEG FELSVATNHL
201: GHFLLARLLL DDLKKSDYPS KRLIIVGSIT GNTNTLAGNV PPKANLGDLR GLAGGLNGLN SSAMIDGGDF DGAKAYKDSK VCNMLTMQEF HRRFHEETGV
301: TFASLYPGCI ASTGLFREHI PLFRALFPPF QKYITKGYVS ETESGKRLAQ VVSDPSLTKS GVYWSWNNAS ASFENQLSEE ASDVEKARKV WEISEKLVGL
401: A

Arabidopsis Description

PORBProtochlorophyllide reductase B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21218]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.