Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
18071923
plastid: 22160430 golgi: 25769308 |
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G593000.1 | Wheat | plastid | 98.97 | 98.97 |
| TraesCS2D01G563600.1 | Wheat | golgi, plastid | 98.45 | 98.45 |
| TraesCS2D01G563700.1 | Wheat | cytosol | 58.76 | 94.61 |
| HORVU2Hr1G006120.3 | Barley | plastid | 28.87 | 91.8 |
| HORVU4Hr1G073090.1 | Barley | plastid | 32.99 | 91.43 |
| HORVU5Hr1G104070.1 | Barley | plastid | 29.9 | 90.62 |
| EES11656 | Sorghum | plastid | 84.54 | 85.19 |
| Zm00001d001820_P001 | Maize | plastid | 84.79 | 85.01 |
| Os04t0678700-01 | Rice | plastid | 83.76 | 83.98 |
| HORVU2Hr1G020490.1 | Barley | plastid | 33.76 | 80.86 |
| GSMUA_Achr3P14270_001 | Banana | plastid | 76.55 | 76.74 |
| HORVU2Hr1G119050.2 | Barley | mitochondrion | 71.13 | 73.6 |
| KRH27209 | Soybean | nucleus, plastid | 75.52 | 73.43 |
| CDY29311 | Canola | plastid | 75.0 | 73.3 |
| Solyc12g013710.1.1 | Tomato | extracellular, nucleus, plastid | 75.0 | 73.3 |
| CDX89249 | Canola | plastid | 75.0 | 73.3 |
| Solyc10g006900.2.1 | Tomato | plastid | 74.48 | 73.16 |
| PGSC0003DMT400039734 | Potato | plastid | 74.74 | 73.05 |
| VIT_19s0014g03160.t01 | Wine grape | plastid | 74.48 | 72.98 |
| Bra026349.1-P | Field mustard | plastid | 72.94 | 72.94 |
| GSMUA_Achr7P04280_001 | Banana | plastid | 74.74 | 72.86 |
| Bra019049.1-P | Field mustard | plastid | 74.48 | 72.61 |
| KRH55334 | Soybean | plastid | 74.48 | 72.43 |
| PGSC0003DMT400064369 | Potato | plastid | 73.97 | 72.11 |
| VIT_12s0059g00270.t01 | Wine grape | plastid | 73.71 | 71.68 |
| AT5G54190.1 | Thale cress | plastid | 74.48 | 71.36 |
| Bra003004.1-P | Field mustard | plastid | 73.71 | 70.97 |
| AT4G27440.1 | Thale cress | plastid | 73.2 | 70.82 |
| CDY14325 | Canola | plastid | 73.71 | 70.79 |
| CDX89877 | Canola | plastid | 72.16 | 70.0 |
| Bra033415.1-P | Field mustard | plastid | 71.91 | 69.75 |
| TraesCS1A01G171000.1 | Wheat | golgi, plastid | 74.74 | 69.54 |
| CDY18175 | Canola | plastid | 71.65 | 69.5 |
| CDY51384 | Canola | plastid | 71.13 | 69.35 |
| CDY15470 | Canola | plastid | 71.13 | 69.35 |
| AT1G03630.1 | Thale cress | plastid | 71.65 | 69.33 |
| Bra030540.1-P | Field mustard | plastid | 70.88 | 69.1 |
| KRH26074 | Soybean | plastid | 60.82 | 69.01 |
| PGSC0003DMT400047264 | Potato | plastid | 70.36 | 68.59 |
| CDX98171 | Canola | plastid | 61.6 | 68.48 |
| CDY18309 | Canola | plastid | 61.34 | 68.19 |
| Solyc07g054210.2.1 | Tomato | plastid | 70.1 | 68.17 |
| CDY29840 | Canola | plastid | 73.97 | 45.34 |
| CDX92832 | Canola | plastid | 74.23 | 45.21 |
| TraesCS4A01G311400.1 | Wheat | mitochondrion, plastid | 29.12 | 35.76 |
| TraesCS4A01G492800.1 | Wheat | mitochondrion, plastid | 9.79 | 33.04 |
| TraesCS5A01G280400.1 | Wheat | plastid | 26.55 | 31.99 |
| TraesCS1A01G207500.1 | Wheat | cytosol | 25.77 | 31.75 |
| TraesCS4A01G218300.1 | Wheat | mitochondrion | 23.71 | 28.48 |
| TraesCS3A01G077400.2 | Wheat | cytosol, plastid | 24.74 | 27.43 |
| TraesCS5A01G527400.1 | Wheat | mitochondrion | 22.68 | 26.43 |
| TraesCS5A01G527300.1 | Wheat | mitochondrion | 22.94 | 26.18 |
| TraesCS4A01G428800.1 | Wheat | mitochondrion, plastid | 22.94 | 24.79 |
| TraesCS7A01G061000.1 | Wheat | mitochondrion, plastid | 22.68 | 24.79 |
| TraesCS6A01G045200.1 | Wheat | cytosol | 23.97 | 22.91 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G590600.1 | EnsemblPlantsGene:TraesCS2A01G590600 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016630 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:Prochl_reduct | InterPro:SDR_fam |
| KEGG:00860+1.3.1.33 | PANTHER:PTHR44419 | PANTHER:PTHR44419:SF2 | PFAM:PF00106 | PRINTS:PR00081 | SEG:seg |
| SUPFAM:SSF51735 | TIGR:cd09810 | TIGRFAMs:TIGR01289 | MapMan:7.12.6.5.1 | : | : |
Description
No Description!
Coordinates
chr2A:-:778722796..778724365
Molecular Weight (calculated)
41246.6 Da
IEP (calculated)
9.849
GRAVY (calculated)
-0.061
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQLLPSTL SVPKKGSSMG AVAVKDTAAF LGVSSKAKKA SLAVRTQVAT APSSVTTSPC SATAKPSGKK TLRQGVVVIT GASSGLGLAA AKALAETGKW
101: HVVMACRDFL KASKAAKAAG MADGSYTVMH LDLASLDSVR QFVDAFRRAE MPLDVLVCNA AIYRPTARTP TFTADGHEMS VGVNHLGHFL LARLLMEDLQ
201: KSDYPSRRMV IVGSITGNSN TLAGNVPPKA SLGDLRGLAG GLSGASGSAM IDGDESFDGA KAYKDSKVCN MLTMQEFHRR YHEETGITFS SLYPGCIATT
301: GLFREHIPLF RTLFPPFQKF ITKGFVSEAE SGKRLAQVVA EPSLTKSGVY WSWNKDSASF ENQLSQEASD PEKARKVWEL SEKLVGLA
101: HVVMACRDFL KASKAAKAAG MADGSYTVMH LDLASLDSVR QFVDAFRRAE MPLDVLVCNA AIYRPTARTP TFTADGHEMS VGVNHLGHFL LARLLMEDLQ
201: KSDYPSRRMV IVGSITGNSN TLAGNVPPKA SLGDLRGLAG GLSGASGSAM IDGDESFDGA KAYKDSKVCN MLTMQEFHRR YHEETGITFS SLYPGCIATT
301: GLFREHIPLF RTLFPPFQKF ITKGFVSEAE SGKRLAQVVA EPSLTKSGVY WSWNKDSASF ENQLSQEASD PEKARKVWEL SEKLVGLA
001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A
Arabidopsis Description
PORCProtochlorophyllide reductase C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48741]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.