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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus, plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g087650.2.1
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc07g054210.2.1
Solyc10g006900.2.1
Solyc11g068750.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G03630.1 Solyc07g054210.2.1 AT1G03630.1 21798944
AT1G03630.1 Solyc10g006900.2.1 AT1G03630.1 21798944
AT1G03630.1 Solyc12g013710.1.1 AT1G03630.1 21798944
AT1G03630.1 Solyc05g015640.2.1 AT1G27300.1 21798944
AT1G03630.1 Solyc03g120880.2.1 AT3G16310.1 21798944
AT1G03630.1 Solyc02g071920.2.1 AT4G19030.1 21798944
AT1G03630.1 Solyc03g005980.2.1 AT4G19030.1 21798944
AT1G03630.1 Solyc07g054210.2.1 AT4G27440.1 21798944
AT1G03630.1 Solyc10g006900.2.1 AT4G27440.1 21798944
AT1G03630.1 Solyc12g013710.1.1 AT4G27440.1 21798944
AT1G03630.1 Solyc01g087650.2.1 AT5G11980.1 21798944
AT1G03630.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT1G03630.1 Solyc11g068750.1.1 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400039734 Potato plastid 98.99 98.99
Solyc10g006900.2.1 Tomato plastid 88.16 88.61
VIT_19s0014g03160.t01 Wine grape plastid 84.89 85.1
CDX89249 Canola plastid 83.88 83.88
Bra026349.1-P Field mustard plastid 81.86 83.76
CDY29311 Canola plastid 83.63 83.63
KRH27209 Soybean nucleus, plastid 83.12 82.71
Bra003004.1-P Field mustard plastid 83.63 82.38
CDY14325 Canola plastid 83.63 82.18
Bra019049.1-P Field mustard plastid 82.37 82.16
AT4G27440.1 Thale cress plastid 82.87 82.04
KRH55334 Soybean plastid 82.12 81.7
TraesCS2D01G563700.1 Wheat cytosol 49.12 80.91
AT5G54190.1 Thale cress plastid 82.37 80.74
CDY51384 Canola plastid 79.85 79.65
CDY15470 Canola plastid 79.6 79.4
Bra030540.1-P Field mustard plastid 79.35 79.15
CDX98171 Canola plastid 69.52 79.08
AT1G03630.1 Thale cress plastid 79.6 78.8
CDY18309 Canola plastid 69.27 78.8
CDY18175 Canola plastid 79.09 78.5
Bra033415.1-P Field mustard plastid 79.09 78.5
Solyc07g054210.2.1 Tomato plastid 78.84 78.45
CDX89877 Canola plastid 78.84 78.25
KRH26074 Soybean plastid 67.0 77.78
GSMUA_Achr3P14270_001 Banana plastid 75.82 77.78
EER94008 Sorghum plastid 76.83 77.41
Zm00001d013937_P001 Maize plastid 77.08 77.27
GSMUA_Achr11P... Banana plastid 77.08 77.27
TraesCS1B01G186300.1 Wheat plastid 76.32 76.71
HORVU1Hr1G044680.1 Barley plastid 76.32 76.71
Zm00001d032576_P001 Maize plastid 76.07 76.26
Os04t0678700-01 Rice plastid 74.06 75.97
EES11656 Sorghum plastid 73.3 75.58
TraesCS2D01G563600.1 Wheat golgi, plastid 73.8 75.52
Os10t0496900-02 Rice plastid 76.32 75.37
GSMUA_Achr7P04280_001 Banana plastid 75.31 75.13
TraesCS2B01G593000.1 Wheat plastid 73.3 75.0
TraesCS2A01G590600.1 Wheat plastid 73.3 75.0
Zm00001d001820_P001 Maize plastid 72.54 74.42
TraesCS1D01G168700.2 Wheat plastid 76.07 72.42
TraesCS1A01G171000.1 Wheat golgi, plastid 76.07 72.42
HORVU4Hr1G073090.1 Barley plastid 20.4 57.86
HORVU5Hr1G104070.1 Barley plastid 18.14 56.25
HORVU2Hr1G006120.3 Barley plastid 17.13 55.74
HORVU2Hr1G020490.1 Barley plastid 22.42 54.94
HORVU2Hr1G119050.2 Barley mitochondrion 51.89 54.93
CDY29840 Canola plastid 82.37 51.66
CDX92832 Canola plastid 82.62 51.49
Solyc03g025400.2.1 Tomato cytosol 26.95 33.86
Solyc03g025390.2.1 Tomato cytosol 26.2 33.23
Solyc03g025410.2.1 Tomato nucleus 26.2 33.23
Solyc08g081200.2.1 Tomato cytosol 25.94 32.7
Solyc03g025370.2.1 Tomato cytosol, nucleus, plastid 25.44 32.27
Solyc10g086390.1.1 Tomato mitochondrion 25.69 31.58
Solyc09g010510.2.1 Tomato cytosol, mitochondrion, plastid 24.94 30.94
Solyc08g008060.1.1 Tomato cytosol 24.18 30.48
Solyc08g082870.2.1 Tomato cytosol 22.67 26.71
Solyc03g098460.2.1 Tomato cytosol 22.92 23.64
Solyc03g112540.2.1 Tomato endoplasmic reticulum 21.16 23.33
HORVU2Hr1G119090.2 Barley plastid 23.93 22.46
Solyc06g071610.1.1 Tomato plastid 20.4 22.13
Solyc12g042640.1.1 Tomato cytosol 19.9 21.76
Protein Annotations
KEGG:00860+1.3.1.33Gene3D:3.40.50.720MapMan:7.12.6.5.1GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0015979GO:GO:0015995GO:GO:0016491
GO:GO:0016630GO:GO:0055114UniProt:K4DCQ6InterPro:NAD(P)-bd_dom_sfPFAM:PF00106PRINTS:PR00081
PANTHER:PTHR44419PANTHER:PTHR44419:SF3InterPro:Prochl_reductInterPro:SDR_famSUPFAM:SSF51735EnsemblPlantsGene:Solyc12g013710.1
EnsemblPlants:Solyc12g013710.1.1TIGRFAMs:TIGR01289UniParc:UPI000276A4B1SEG:seg::
Description
No Description!
Coordinates
chr12:-:4544984..4547459
Molecular Weight (calculated)
42814.3 Da
IEP (calculated)
9.597
GRAVY (calculated)
-0.151
Length
397 amino acids
Sequence
(BLAST)
001: MALQAAALLP STFSIPKEGK TSASLKDSSL FGISLSDHVK SDFGSSFKIK SGRKSSLGAI RAETMVASPG VTSTPVTGKK TLRKGCVVIT GASSGLGLAT
101: AKALAETGKW HVIMACRDFL KAERAAKSAG MPKENYTIMH LDLASLDSVR QFVDNFRRSG NPLDVLVCNA AVYQPTAKEP SFTAEGFELS VGTNHLGHFL
201: LSRLLIDDLK QSDYPSKRLI IVGSITGNTN TLAGNVPPKA NLGDLRGLAR GLDGLNSSAM IDGGDFDGAK AYKDSKVCNM LTMQEFHRRY HEETGITFAS
301: LYPGCIATTG LFREHIPLFR LLFPPFQKFI TKGFVSEAES GKRLAQVVSD PSLTKSGVYW SWNKNSSSFE NQLSEEASDV EKARKVWEVS EKLVGLA
Best Arabidopsis Sequence Match ( AT5G54190.1 )
(BLAST)
001: MALQAASLVS SAFSVRKDGK LNASASSSFK ESSLFGVSLS EQSKADFVSS SLRCKREQSL RNNKAIIRAQ AIATSTPSVT KSSLDRKKTL RKGNVVVTGA
101: SSGLGLATAK ALAETGKWHV IMACRDFLKA ERAAQSAGMP KDSYTVMHLD LASLDSVRQF VDNFRRAEMP LDVLVCNAAV YQPTANQPTF TAEGFELSVG
201: INHLGHFLLS RLLIDDLKNS DYPSKRLIIV GSITGNTNTL AGNVPPKANL GDLRGLAGGL NGLNSSAMID GGDFVGAKAY KDSKVCNMLT MQEFHRRFHE
301: DTGITFASLY PGCIATTGLF REHIPLFRTL FPPFQKYITK GYVSESEAGK RLAQVVADPS LTKSGVYWSW NKTSASFENQ LSQEASDVEK ARRVWEVSEK
401: LVGLA
Arabidopsis Description
PORAPORA [Source:UniProtKB/TrEMBL;Acc:A0A178UR02]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.