CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74433
CDY56031

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	CDX74433	AT5G39730.1	21798944
AT5G50130.1	CDY56031	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037939.1-P	Field mustard	cytosol	75.12	94.17
AT5G50130.1	Thale cress	mitochondrion	46.87	86.14
CDX71585	Canola	mitochondrion	42.7	78.47
KRH03249	Soybean	mitochondrion, plastid	36.92	68.25
KRH57109	Soybean	mitochondrion	36.76	67.95
KRH54355	Soybean	cytosol	35.79	67.58
PGSC0003DMT400046811	Potato	plastid	35.15	66.16
VIT_17s0000g08920.t01	Wine grape	cytosol	34.83	65.76
KRH63592	Soybean	plastid	36.12	63.2
PGSC0003DMT400069439	Potato	plastid	24.72	63.11
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	34.99	60.56
GSMUA_Achr1P25440_001	Banana	cytosol	28.57	57.79
Solyc06g071610.1.1	Tomato	plastid	33.71	57.38
CDY53896	Canola	plastid	16.69	52.0
CDY72089	Canola	cytosol	16.53	51.24
CDY10985	Canola	cytosol	27.29	51.2
CDX76323	Canola	cytosol	27.13	50.9
CDY72311	Canola	cytosol	16.21	50.0
CDY50440	Canola	mitochondrion	26.97	49.56
CDY18436	Canola	cytosol	25.04	48.6
CDX88292	Canola	cytosol	12.2	48.41
CDX81232	Canola	cytosol	24.88	48.29
CDY52817	Canola	cytosol	24.56	47.81
CDY53433	Canola	plastid	26.65	47.7
CDY52816	Canola	cytosol	24.4	47.5
CDX74954	Canola	cytosol	24.4	47.5
CDY10440	Canola	plastid	24.56	47.08
CDY40365	Canola	mitochondrion	24.88	46.83
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	10.11	45.99
CDY11217	Canola	mitochondrion	24.24	45.62
CDX86777	Canola	cytosol	22.31	43.85
CDY13264	Canola	cytosol	22.31	43.85
CDY10884	Canola	plastid	22.31	43.17
CDY68648	Canola	cytosol	14.45	43.06
CDY55418	Canola	cytosol	20.55	42.81
CDX76338	Canola	cytosol, plastid	21.99	42.55
CDY69917	Canola	endoplasmic reticulum	19.9	40.66
CDY44096	Canola	mitochondrion, plastid	22.47	38.78
CDY70072	Canola	cytosol	8.03	29.94
CDX92838	Canola	cytosol	13.48	26.25
CDY19025	Canola	cytosol	14.77	24.66
CDX89228	Canola	cytosol, nucleus, peroxisome	14.61	24.4
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	13.32	22.68
CDY18175	Canola	plastid	14.45	22.5
CDX89877	Canola	plastid	14.45	22.5
CDX89249	Canola	plastid	14.29	22.42
CDY29311	Canola	plastid	14.29	22.42
CDY14325	Canola	plastid	14.45	22.28
CDY15470	Canola	plastid	14.13	22.11
CDY51384	Canola	plastid	14.13	22.11
CDY64354	Canola	cytosol	7.7	21.15
CDX98171	Canola	plastid	11.56	20.63
CDY18309	Canola	plastid	11.4	20.34
CDY27027	Canola	golgi, mitochondrion, nucleus	14.45	20.09
CDX96191	Canola	mitochondrion	14.13	20.0
CDY47833	Canola	cytosol, nucleus, plastid	26.97	18.86
CDY08387	Canola	cytosol, nucleus, plastid	26.81	18.74
CDY29840	Canola	plastid	14.61	14.38
CDX92832	Canola	plastid	14.61	14.29
CDY38726	Canola	cytosol, golgi, plastid	15.41	11.54

Protein Annotations

EnsemblPlants:CDY37755	EnsemblPlantsGene:GSBRNA2T00064666001	GO:A0A078HHD1	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF120	PFAM:PF00106	PRINTS:PR00081	ProteinID:CDY37755	ProteinID:CDY37755.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EE0B01	UniProt:A0A078HHD1	MapMan:35.1	:	:

Description

BnaA10g05660DBnaA10g05660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHD1]

Coordinates

chrLK032407:-:72382..81355

Molecular Weight (calculated)

68700.1 Da

IEP (calculated)

9.261

GRAVY (calculated)

-0.231

Length

623 amino acids

Sequence
(BLAST)

001: MEGSPYRKFF ISWKGARFQG PNSGFLLAGT WSVPLSGTRG SGSCLEAGEN DTGVFFPNSS HTSSGGIVRD LEVQIGDALV PVDFCWAFLS TIGAKCNMQT
101: NQLFLTLIDP HVHYNPIPVK NPHTSSRRID DPGLIAAGHC GAEYRTKYSA SIETHTATSV DSAHRKSIDM AKVESVDSTH HQRVTNESYE IAGGVDNHFN
201: LENTPLTVIE LGDSTRRRNN LFRTHVLPIS KISKNNKHYN RTTTKRPNGF GSRSTAEQVT QHCFLPYSHL TAIITGGTSG IGAETTRVLA KRGVRVVMAV
301: RDMKKAEIVK ERIVRESPEA DIVLLEIDLS SLSSVARFCS QFLSQDLPLN IIMYYPNHIP IDHPSFHYSS QSMLNSGVLN RCVTEKVSQL CHARPLSQPV
401: DPSRSNGRNN AGIFSPNLEF SEEKIELTFA TNFLGRHYLL TEMLIKKMID TAKKSGIEGR VINLTSVIHS WVKPDCFSFP ELLHPIKYNG TKAYAQSKLA
501: TILHAKALSR RLKDRNANVT INAVHPGIVK TGIIRAHKGL LTDSLFLIAS KLLKSVSQGA ATTCYVALSN ETKRISGKYF ADSNETNCSD LANDVSLALK
601: LCTNSHTLIH DYLHLSLPNL SLL

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.