CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52624
KRH61964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	KRH52624	AT5G39730.1	21798944
AT5G50130.1	KRH61964	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54355	Soybean	cytosol	89.89	96.97
KRH57109	Soybean	mitochondrion	78.37	82.79
KRH03249	Soybean	mitochondrion, plastid	77.25	81.6
VIT_17s0000g08920.t01	Wine grape	cytosol	74.44	80.3
PGSC0003DMT400046811	Potato	plastid	68.82	74.02
AT5G50130.1	Thale cress	mitochondrion	66.29	69.62
PGSC0003DMT400069439	Potato	plastid	46.91	68.44
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	68.82	68.06
GSMUA_Achr1P25440_001	Banana	cytosol	56.18	64.94
Solyc06g071610.1.1	Tomato	plastid	65.45	63.66
CDX71585	Canola	mitochondrion	53.37	56.05
KRH41377	Soybean	cytosol	48.31	51.04
KRH08894	Soybean	plastid	29.78	48.85
KRH08898	Soybean	cytosol	42.98	48.42
KRH32305	Soybean	plastid	43.82	48.3
KRG95813	Soybean	nucleus	43.82	48.3
KRH19708	Soybean	nucleus	43.82	48.3
KRH67540	Soybean	nucleus	43.54	47.99
KRH38432	Soybean	cytosol	42.98	47.96
KRG91556	Soybean	cytosol	41.85	47.6
KRH08897	Soybean	cytosol, mitochondrion	41.85	47.45
KRH38433	Soybean	cytosol	42.42	47.34
KRH38426	Soybean	cytosol	43.26	47.24
KRH38431	Soybean	plastid	42.42	46.75
KRH59919	Soybean	cytosol, plastid	41.01	46.35
KRH41194	Soybean	cytosol, plastid	40.45	45.71
Bra037939.1-P	Field mustard	cytosol	63.2	45.27
KRH38419	Soybean	plastid	40.45	45.14
KRG91557	Soybean	cytosol	25.0	42.79
KRH35271	Soybean	plastid	41.57	42.41
KRH35274	Soybean	cytosol, mitochondrion, plastid	41.85	41.5
KRH08895	Soybean	cytosol	41.85	39.01
CDY37755	Canola	mitochondrion, plastid	63.2	36.12
KRH09442	Soybean	cytosol	26.12	24.67
KRH38907	Soybean	endoplasmic reticulum	25.56	24.07
KRH55334	Soybean	plastid	26.12	23.31
KRH27209	Soybean	nucleus, plastid	25.56	22.81
KRH26074	Soybean	plastid	20.51	21.34

Protein Annotations

EMBL:ACUP02002703	EnsemblPlants:KRH63592	EnsemblPlantsGene:GLYMA_04G186300	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF120	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ProteinID:KRH63592
ProteinID:KRH63592.1	SUPFAM:SSF51735	UniParc:UPI0002964013	UniProt:I1JXA2	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr4:-:45628652..45632915

Molecular Weight (calculated)

38987.3 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.073

Length

356 amino acids

Sequence
(BLAST)

001: MYKNSCMCLH SLTFKCHLSL QHSKAMKATL RYLAGMAGPS GFGSNSTAEQ VTEDCSSFLP SAALTALITG ASSGIGAETA RVLAKRGVRV VIAARDLKKA
101: TEVKKNIQKE TPKAEVILLE IDLGSFGSVQ RFCSEFLALE LPLNILINNA GMFSQNLEFS EDKIEMTFAT NYLGHFLLTE ILIDKMIETA EKTCIQGRII
201: NVSSVIHSWE KKDGFRFNDI LSGKKYNGTR AYAQSKLANI LHAKEIAKQL KARNARVTIN AVHPGIVKTG IIRAHKGLIT DSLFFIASKL LKTTSQGAST
301: TCYVALSPKT EGISGKYFAD CNECKCSSLA NDESEAQKLW NNTHALLHKR LRQATI

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.