CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU81934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24050.1	OQU81934	AT1G20770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027353_P001	Maize	mitochondrion	92.39	90.86
Os03t0115700-01	Rice	mitochondrion	81.69	87.35
TraesCS4B01G358400.1	Wheat	mitochondrion	81.13	86.49
TraesCS4D01G351800.1	Wheat	mitochondrion	80.56	85.63
TraesCS5A01G527400.1	Wheat	mitochondrion	80.28	85.59
TraesCS5A01G527300.1	Wheat	mitochondrion	81.13	84.71
TraesCS4B01G358200.1	Wheat	mitochondrion, plastid	79.44	84.68
TraesCS4B01G358500.1	Wheat	mitochondrion	81.69	84.3
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	79.72	81.79
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	79.72	80.4
TraesCS4B01G358300.1	Wheat	plastid	67.32	76.6
GSMUA_Achr8P11870_001	Banana	cytosol	69.58	72.65
KRH41377	Soybean	cytosol	65.35	68.84
VIT_02s0025g02190.t01	Wine grape	cytosol	65.07	68.75
GSMUA_Achr11P...	Banana	cytosol	66.2	68.12
PGSC0003DMT400031933	Potato	cytosol	63.66	67.06
CDY53896	Canola	plastid	37.75	67.0
Solyc08g082870.2.1	Tomato	cytosol	63.1	66.47
EER87765	Sorghum	mitochondrion	65.92	65.0
CDY72311	Canola	cytosol	36.9	64.85
AT4G24050.1	Thale cress	cytosol	60.56	64.76
Bra019248.1-P	Field mustard	cytosol	60.28	64.46
CDY72089	Canola	cytosol	36.34	64.18
Bra013757.1-P	Field mustard	cytosol	59.44	63.55
AT1G64590.1	Thale cress	plastid	59.72	63.47
CDY10985	Canola	cytosol	59.15	63.25
CDX76323	Canola	cytosol	58.87	62.95
CDY50440	Canola	mitochondrion	58.87	61.65
Bra027706.1-P	Field mustard	plastid	59.72	61.27
CDY53433	Canola	plastid	59.72	60.92
Bra027725.1-P	Field mustard	plastid	59.72	59.89
EES02479	Sorghum	cytosol, plastid	44.51	49.38
EER96376	Sorghum	mitochondrion, plastid	43.38	48.73
OQU92191	Sorghum	plastid	40.85	46.33
EER91987	Sorghum	plastid	40.85	46.33
OQU92195	Sorghum	cytosol	40.28	45.4
EES08101	Sorghum	cytosol	43.66	42.23
CDY08387	Canola	cytosol, nucleus, plastid	60.28	24.02
CDY47833	Canola	cytosol, nucleus, plastid	59.72	23.79
EES04360	Sorghum	cytosol	28.17	23.64
EES11656	Sorghum	plastid	24.51	22.6
EER94008	Sorghum	plastid	25.07	22.59
Bra027724.1-P	Field mustard	cytosol, plastid	0.85	0.55

Protein Annotations

EnsemblPlants:OQU93381	EnsemblPlantsGene:SORBI_3001G532501	EntrezGene:8078000	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF114	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	ProteinID:OQU93381
ProteinID:OQU93381.1	RefSeq:XP_002465984.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0001A8266A	UniProt:A0A1Z5SBS2
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:79583214..79587540

Molecular Weight (calculated)

37641.2 Da

IEP (calculated)

8.147

GRAVY (calculated)

0.119

Length

355 amino acids

Sequence
(BLAST)

001: MLRAVRYLLG SPGASGFGSR STAEEVTPDL GATTAIITGA TSGIGAETAR VLAKRGARVV IPARSAKAAE DVRARIVAEC PGADVLVLPL DLSSLASVRA
101: FADRFLALGL PLHLLINNAG KFSHGQLALS EDGVEMTFAT NYLGHFLLTK LLAGRMAETA ADTGVQGRIV NVSSSVHGWF AGDWAEYLHL VTRRKIPYDA
201: TQAYAVSKLA NVLHTKELAA RLQEMGANVT VNCVHPGIVR TRLNRDRDGV LTDLVFLLLS KLLKTIPQAA ATTCYVAAHP RVAGVSGRYF ADCNEALPSP
301: AATDRHEAAR LWRVSEAMID GCTSTGQPQQ DGPDTDTVTG RSFFVASSSS LLIEC

Best Arabidopsis Sequence Match ( AT4G24050.1 )
(BLAST)

001: MIETGKYLLG AAGASGFGSK STAEEVTENC DLRSITAVIT GATSGIGAET ARVLAKRGAR LIFPARNVKA AEEAKERIVS EFPETEIVVM KLDLSSIASV
101: RNFVADFESL DLPLNLLINN AGKLAHEHAI SEDGIEMTFA TNYLGHFLLT NLLLNKMIQT AEETGVQGRI VNVTSGIHGW FSGDLIEYLR LISQPKCQFD
201: ATRAYALSKL ANVLHTKELS SRLQKIGANV TVNCVHPGVV RTRLTRDREG LLTDLVFFLA SKLVKTVPQA AATTCYVATN PRLVNVSGKY FTDCNETTPS
301: GLGTNSSEAT KLWAASEILV TQHSKTSFDP CS

Arabidopsis Description

AT4g24050/T19F6_40 [Source:UniProtKB/TrEMBL;Acc:O22985]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.