Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10884 | Canola | plastid | 91.61 | 91.61 |
| Bra013690.1-P | Field mustard | plastid | 90.99 | 90.43 |
| AT4G23420.3 | Thale cress | plastid | 88.51 | 85.59 |
| CDY44096 | Canola | mitochondrion, plastid | 91.3 | 81.44 |
| VIT_02s0025g03380.t01 | Wine grape | cytosol | 71.43 | 73.02 |
| AT4G11410.1 | Thale cress | cytosol, mitochondrion | 69.88 | 70.98 |
| KRH59919 | Soybean | cytosol, plastid | 68.01 | 69.52 |
| KRH41194 | Soybean | cytosol, plastid | 68.01 | 69.52 |
| PGSC0003DMT400032133 | Potato | cytosol | 67.7 | 69.21 |
| GSMUA_AchrUn_... | Banana | cytosol | 66.46 | 68.37 |
| Solyc08g081200.2.1 | Tomato | cytosol | 66.46 | 67.94 |
| Solyc08g008060.1.1 | Tomato | cytosol | 64.29 | 65.71 |
| EER96376 | Sorghum | mitochondrion, plastid | 63.35 | 64.56 |
| GSMUA_Achr2P18620_001 | Banana | plastid | 63.04 | 64.24 |
| Os09t0570300-01 | Rice | plasma membrane | 61.49 | 62.66 |
| PGSC0003DMT400014810 | Potato | mitochondrion | 46.89 | 61.63 |
| TraesCS4B01G002900.1 | Wheat | golgi | 60.25 | 61.39 |
| TraesCS4A01G311400.1 | Wheat | mitochondrion, plastid | 59.94 | 61.08 |
| TraesCS4D01G003200.1 | Wheat | golgi | 59.94 | 61.08 |
| TraesCS4D01G002700.2 | Wheat | mitochondrion, plastid | 59.63 | 60.95 |
| TraesCS4B01G003400.1 | Wheat | plastid | 59.32 | 60.63 |
| EER91987 | Sorghum | plastid | 57.76 | 59.42 |
| TraesCS5B01G461100.1 | Wheat | mitochondrion, plastid | 21.12 | 59.13 |
| OQU92195 | Sorghum | cytosol | 57.45 | 58.73 |
| OQU92191 | Sorghum | plastid | 56.83 | 58.47 |
| TraesCS4D01G003400.2 | Wheat | mitochondrion | 58.39 | 58.39 |
| Zm00001d047150_P003 | Maize | plastid | 56.83 | 58.1 |
| TraesCS1B01G221200.1 | Wheat | cytosol | 56.21 | 57.46 |
| TraesCS1A01G207500.1 | Wheat | cytosol | 56.21 | 57.46 |
| TraesCS4A01G492800.1 | Wheat | mitochondrion, plastid | 20.5 | 57.39 |
| Zm00001d019754_P001 | Maize | mitochondrion, plastid | 62.73 | 57.22 |
| TraesCS1D01G210800.1 | Wheat | plastid | 55.9 | 56.6 |
| TraesCS3B01G220800.1 | Wheat | mitochondrion, plastid | 20.19 | 56.52 |
| Os10t0547900-01 | Rice | cytosol | 54.97 | 56.37 |
| Os10t0548000-02 | Rice | cytosol, peroxisome, plastid | 55.59 | 56.11 |
| Zm00001d029840_P003 | Maize | plastid | 58.07 | 55.99 |
| Os04t0291100-01 | Rice | mitochondrion | 53.73 | 55.1 |
| AT5G02540.1 | Thale cress | mitochondrion | 56.21 | 54.68 |
| AT2G37540.1 | Thale cress | cytosol | 53.73 | 53.89 |
| Zm00001d025129_P001 | Maize | mitochondrion | 39.13 | 53.62 |
| AT4G24050.1 | Thale cress | cytosol | 45.65 | 44.28 |
| AT1G64590.1 | Thale cress | plastid | 44.41 | 42.81 |
| AT5G50130.1 | Thale cress | mitochondrion | 44.72 | 42.48 |
| AT5G53090.1 | Thale cress | cytosol | 33.85 | 29.07 |
| AT5G53100.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 32.61 | 28.85 |
| AT4G27760.1 | Thale cress | cytosol | 31.99 | 27.39 |
| AT4G27440.1 | Thale cress | plastid | 31.99 | 25.69 |
| AT1G03630.1 | Thale cress | plastid | 29.81 | 23.94 |
| AT5G54190.1 | Thale cress | plastid | 29.5 | 23.46 |
Protein Annotations
| MapMan:23.1.3.5.1 | Gene3D:3.40.50.720 | EntrezGene:828442 | UniProt:A0A178V5I8 | UniProt:A2RVM0 | ProteinID:AEE84753.1 |
| ProteinID:AEE84754.1 | ProteinID:AEE84755.1 | EMBL:AK227455 | ArrayExpress:AT4G23430 | EnsemblPlantsGene:AT4G23430 | RefSeq:AT4G23430 |
| TAIR:AT4G23430 | RefSeq:AT4G23430-TAIR-G | EnsemblPlants:AT4G23430.2 | TAIR:AT4G23430.2 | EMBL:AY088231 | EMBL:BT030011 |
| ProteinID:CAA20464.1 | ProteinID:CAB79298.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009528 | GO:GO:0009536 | GO:GO:0009706 | GO:GO:0009941 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_001119035.1 | RefSeq:NP_567681.1 |
| RefSeq:NP_849428.1 | ProteinID:OAP01041.1 | PFAM:PF00106 | PO:PO:0000293 | PRINTS:PR00081 | PANTHER:PTHR24320 |
| PANTHER:PTHR24320:SF146 | InterPro:SDR_fam | SUPFAM:SSF51735 | UniParc:UPI0000196D94 | SEG:seg | : |
Description
TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
Coordinates
chr4:+:12228903..12231718
Molecular Weight (calculated)
34741.6 Da
IEP (calculated)
9.229
GRAVY (calculated)
-0.141
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.