Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40365 | Canola | mitochondrion | 94.56 | 94.56 |
| Bra009580.1-P | Field mustard | mitochondrion | 94.26 | 94.26 |
| CDY68648 | Canola | cytosol | 59.21 | 93.78 |
| CDY10440 | Canola | plastid | 91.24 | 92.92 |
| CDY11217 | Canola | mitochondrion | 91.24 | 91.24 |
| Bra005729.1-P | Field mustard | mitochondrion | 91.24 | 91.24 |
| CDY55418 | Canola | cytosol | 80.36 | 88.96 |
| CDY10441 | Canola | cytosol, extracellular, mitochondrion, plastid | 35.05 | 84.67 |
| VIT_08s0040g03400.t01 | Wine grape | plastid | 70.39 | 71.91 |
| Solyc10g086390.1.1 | Tomato | mitochondrion | 69.18 | 70.9 |
| PGSC0003DMT400049292 | Potato | mitochondrion | 68.58 | 70.28 |
| KRH19708 | Soybean | nucleus | 68.58 | 70.28 |
| PGSC0003DMT400022813 | Potato | mitochondrion | 67.37 | 69.69 |
| GSMUA_Achr11P... | Banana | cytosol | 67.98 | 69.44 |
| GSMUA_Achr8P20890_001 | Banana | cytosol, mitochondrion, plastid | 67.07 | 69.38 |
| KRH32305 | Soybean | plastid | 67.37 | 69.04 |
| AT2G37540.1 | Thale cress | cytosol | 66.47 | 68.54 |
| KRG95813 | Soybean | nucleus | 66.77 | 68.42 |
| KRH67540 | Soybean | nucleus | 66.77 | 68.42 |
| GSMUA_Achr7P15240_001 | Banana | plastid | 66.77 | 68.21 |
| Solyc09g010510.2.1 | Tomato | cytosol, mitochondrion, plastid | 65.86 | 68.12 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 65.86 | 67.91 |
| Zm00001d039848_P002 | Maize | cytosol, mitochondrion, plastid | 64.05 | 66.25 |
| EES02479 | Sorghum | cytosol, plastid | 63.75 | 65.94 |
| Os01t0151700-01 | Rice | cytosol | 62.54 | 64.49 |
| TraesCS5D01G287000.1 | Wheat | plastid | 62.24 | 63.98 |
| TraesCS5B01G279400.1 | Wheat | plastid | 62.24 | 63.98 |
| TraesCS3B01G091800.3 | Wheat | cytosol | 61.33 | 63.44 |
| TraesCS5A01G280400.1 | Wheat | plastid | 61.63 | 63.35 |
| TraesCS3A01G077400.2 | Wheat | cytosol, plastid | 60.12 | 56.86 |
| HORVU3Hr1G013970.6 | Barley | plastid | 60.42 | 56.34 |
| AT4G23430.2 | Thale cress | plastid | 54.68 | 56.21 |
| AT4G23420.3 | Thale cress | plastid | 55.89 | 55.56 |
| AT4G11410.1 | Thale cress | cytosol, mitochondrion | 51.96 | 54.26 |
| Zm00001d039397_P001 | Maize | cytosol | 39.27 | 53.5 |
| HORVU5Hr1G075530.8 | Barley | cytosol, nucleus, plastid | 61.33 | 52.32 |
| TraesCS3D01G077500.2 | Wheat | cytosol, plastid | 53.17 | 50.29 |
| AT4G24050.1 | Thale cress | cytosol | 48.94 | 48.8 |
| AT5G50130.1 | Thale cress | mitochondrion | 48.64 | 47.49 |
| AT1G64590.1 | Thale cress | plastid | 47.13 | 46.71 |
| AT5G53100.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 28.7 | 26.1 |
| AT4G27760.1 | Thale cress | cytosol | 28.4 | 25.0 |
| AT5G53090.1 | Thale cress | cytosol | 28.1 | 24.8 |
| AT1G03630.1 | Thale cress | plastid | 29.61 | 24.44 |
| AT4G27440.1 | Thale cress | plastid | 28.4 | 23.44 |
| AT5G54190.1 | Thale cress | plastid | 27.49 | 22.47 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EntrezGene:831913 | ProteinID:AED90487.1 | ArrayExpress:AT5G02540 | EnsemblPlantsGene:AT5G02540 |
| RefSeq:AT5G02540 | TAIR:AT5G02540 | RefSeq:AT5G02540-TAIR-G | EnsemblPlants:AT5G02540.1 | TAIR:AT5G02540.1 | UniProt:F4KCF2 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 |
| InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_568102.1 | PFAM:PF00106 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00080 | PRINTS:PR00081 | PANTHER:PTHR24320 |
| PANTHER:PTHR24320:SF81 | InterPro:SDR_fam | SUPFAM:SSF51735 | UniParc:UPI0000162441 | SEG:seg | : |
Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
Coordinates
chr5:+:568425..570973
Molecular Weight (calculated)
36193.5 Da
IEP (calculated)
8.584
GRAVY (calculated)
-0.029
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.