Factsheet for PGSC0003DMT400022813

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	94.69	94.69
PGSC0003DMT400049292	Potato	mitochondrion	81.88	81.11
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	74.06	74.06
VIT_08s0040g03400.t01	Wine grape	plastid	74.06	73.15
KRG95813	Soybean	nucleus	72.81	72.14
GSMUA_Achr11P...	Banana	cytosol	72.19	71.3
KRH67540	Soybean	nucleus	71.88	71.21
KRH32305	Soybean	plastid	71.88	71.21
GSMUA_Achr7P15240_001	Banana	plastid	71.88	70.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	70.94	70.72
KRH19708	Soybean	nucleus	71.25	70.59
EES02479	Sorghum	cytosol, plastid	69.38	69.38
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	69.06	69.06
TraesCS5B01G279400.1	Wheat	plastid	69.38	68.94
TraesCS5D01G287000.1	Wheat	plastid	69.06	68.63
Os01t0151700-01	Rice	cytosol	68.75	68.54
TraesCS3B01G091800.3	Wheat	cytosol	68.44	68.44
CDY68648	Canola	cytosol	44.69	68.42
TraesCS5A01G280400.1	Wheat	plastid	68.44	68.01
CDY10440	Canola	plastid	69.06	68.0
AT5G02540.1	Thale cress	mitochondrion	69.69	67.37
CDY40365	Canola	mitochondrion	69.38	67.07
Bra009580.1-P	Field mustard	mitochondrion	69.06	66.77
Bra017180.1-P	Field mustard	cytosol	66.56	66.36
CDY18436	Canola	cytosol	66.25	66.04
CDX81232	Canola	cytosol	66.25	66.04
Bra005188.1-P	Field mustard	cytosol	65.31	65.93
Bra005729.1-P	Field mustard	mitochondrion	68.12	65.86
CDY11217	Canola	mitochondrion	68.12	65.86
CDY52816	Canola	cytosol	65.62	65.62
CDX74954	Canola	cytosol	65.31	65.31
CDY52817	Canola	cytosol	65.0	65.0
AT2G37540.1	Thale cress	cytosol	65.0	64.8
CDY55418	Canola	cytosol	59.69	63.88
CDX88292	Canola	cytosol	31.25	63.69
TraesCS3A01G077400.2	Wheat	cytosol, plastid	66.56	60.86
PGSC0003DMT400040845	Potato	cytosol	58.75	60.06
HORVU3Hr1G013970.6	Barley	plastid	66.56	60.0
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	25.0	58.39
PGSC0003DMT400040848	Potato	plastid	56.88	58.15
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	68.75	56.7
PGSC0003DMT400040847	Potato	cytosol	55.31	56.55
PGSC0003DMT400032133	Potato	cytosol	55.31	56.19
TraesCS3D01G077500.2	Wheat	cytosol, plastid	59.69	54.57
Zm00001d039397_P001	Maize	cytosol	40.94	53.91
PGSC0003DMT400014810	Potato	mitochondrion	41.25	53.88
PGSC0003DMT400085601	Potato	plastid	25.94	51.55
PGSC0003DMT400069439	Potato	plastid	36.56	47.95
PGSC0003DMT400046811	Potato	plastid	48.12	46.53
PGSC0003DMT400031933	Potato	cytosol	47.81	45.4
PGSC0003DMT400047264	Potato	plastid	32.5	26.13
PGSC0003DMT400064369	Potato	plastid	31.56	25.38
PGSC0003DMT400073742	Potato	cytosol	28.12	24.79
PGSC0003DMT400039734	Potato	plastid	30.31	24.43
PGSC0003DMT400026316	Potato	cytosol	29.38	24.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400022813	EnsemblPlantsGene:PGSC0003DMG400008850	EntrezGene:102583799	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106	PGSC:PGSC0003DMG400008850	PRINTS:PR00080	PRINTS:PR00081
RefSeq:XP_006341052.1	SUPFAM:SSF51735	UniParc:UPI000295F0F3	UniProt:M1AH97	MapMan:35.1	:

Description

Short-chain dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400008850]

Coordinates

chr9:+:2039527..2046175

Molecular Weight (calculated)

35229.7 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.110

Length

320 amino acids

Sequence
(BLAST)

001: MFRLITGRPG PSGFGSASTA EQVTHDIDGS NLTAIVTGGA SGIGLETARV LAMRNVHVII AARNMEAANK AKQCILNDNK NARVDVEKLD LSSIRSVKTF
101: ADNFKALDLP LNILINNAGI MFCPFQLSED GVEMQFATNH LGHFYLTNLL LDKMKETAKS SGIEGRIVNL SSVAHICPYK GGIRFQKINQ KNSYQNKLAY
201: AQSKLANILH ANELSRRLQE EGANITVNSV HPGLIMTPLM RHSALLMRIF RAFTCILWKN VPQGAATTCY VALHPSLKGV TGKYYYDCNE YKPSKLARDE
301: ALAKNLWDFS NNLVNASLKI

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.