Factsheet for GSMUA_Achr7P15240_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	82.41	83.44
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	82.41	83.18
GSMUA_Achr11P...	Banana	cytosol	79.32	79.32
EES02479	Sorghum	cytosol, plastid	72.84	73.75
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	72.53	73.44
TraesCS5B01G279400.1	Wheat	plastid	71.6	72.05
Os01t0151700-01	Rice	cytosol	71.3	71.96
VIT_08s0040g03400.t01	Wine grape	plastid	71.91	71.91
PGSC0003DMT400022813	Potato	mitochondrion	70.99	71.88
TraesCS5D01G287000.1	Wheat	plastid	71.3	71.74
TraesCS3B01G091800.3	Wheat	cytosol	70.68	71.56
KRH32305	Soybean	plastid	70.68	70.9
PGSC0003DMT400049292	Potato	mitochondrion	70.68	70.9
Solyc10g086390.1.1	Tomato	mitochondrion	70.68	70.9
TraesCS5A01G280400.1	Wheat	plastid	70.37	70.81
KRH19708	Soybean	nucleus	70.37	70.59
KRG95813	Soybean	nucleus	70.06	70.28
KRH67540	Soybean	nucleus	70.06	70.28
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	69.14	70.0
CDY68648	Canola	cytosol	45.06	69.86
CDY10440	Canola	plastid	68.52	68.31
Bra017180.1-P	Field mustard	cytosol	67.59	68.22
Bra005188.1-P	Field mustard	cytosol	66.67	68.14
CDY52816	Canola	cytosol	67.28	68.12
CDY18436	Canola	cytosol	67.28	67.91
CDX81232	Canola	cytosol	67.28	67.91
CDX74954	Canola	cytosol	66.98	67.81
CDY40365	Canola	mitochondrion	69.14	67.67
CDY52817	Canola	cytosol	66.67	67.5
Bra009580.1-P	Field mustard	mitochondrion	68.83	67.37
AT5G02540.1	Thale cress	mitochondrion	68.21	66.77
Bra005729.1-P	Field mustard	mitochondrion	68.21	66.77
CDY11217	Canola	mitochondrion	68.21	66.77
HORVU3Hr1G013970.6	Barley	plastid	71.91	65.63
TraesCS3A01G077400.2	Wheat	cytosol, plastid	70.37	65.14
AT2G37540.1	Thale cress	cytosol	63.58	64.17
CDY55418	Canola	cytosol	58.95	63.88
CDX88292	Canola	cytosol	30.25	62.42
GSMUA_Achr2P08080_001	Banana	mitochondrion	60.19	60.0
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	70.99	59.28
GSMUA_Achr2P18620_001	Banana	plastid	56.79	58.23
TraesCS3D01G077500.2	Wheat	cytosol, plastid	62.65	58.0
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	24.38	57.66
Zm00001d039397_P001	Maize	cytosol	41.98	55.97
GSMUA_AchrUn_...	Banana	cytosol	53.7	55.59
GSMUA_Achr8P11870_001	Banana	cytosol	47.53	45.29
GSMUA_Achr11P...	Banana	cytosol	48.15	45.22
GSMUA_Achr1P25440_001	Banana	cytosol	42.28	44.48
GSMUA_Achr3P14270_001	Banana	plastid	32.72	27.39
GSMUA_Achr7P04280_001	Banana	plastid	33.64	27.39
GSMUA_Achr11P...	Banana	plastid	33.02	27.02
GSMUA_Achr3P22130_001	Banana	cytosol	53.7	24.72
GSMUA_Achr7P04190_001	Banana	cytosol	29.94	23.66
GSMUA_AchrUn_...	Banana	cytosol	12.04	15.35

Protein Annotations

EnsemblPlants:GSMUA_Achr7P15240_001	EnsemblPlants:GSMUA_Achr7T15240_001	EnsemblPlantsGene:GSMUA_Achr7G15240_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000295C29B	UniProt:M0THR1	MapMan:35.1	:	:

Description

Putative Retinol dehydrogenase 12 [Source:GMGC_GENE;Acc:GSMUA_Achr7G15240_001]

Coordinates

chr7:+:12226703..12229826

Molecular Weight (calculated)

35626.4 Da

IEP (calculated)

10.192

GRAVY (calculated)

-0.046

Length

324 amino acids

Sequence
(BLAST)

001: MGFFRLVTGL PGPSGFGSAS TAEQVTAGID ASNLTVIITG GASGIGTETA RVFALRGAHV IIAARNLKAA DGAKQLIQRT APASRVDILE LDLSSLKSVR
101: AFADKFLSMD LPLDILINNA GVMFCPYQLS RDGIEMQFAT NHLGHFLLTN LLLEKMKSTA KKTGMEGRII NLSSIAHKHT YKGGIWFDKL NDKDVYSDKK
201: AYGQSKLANI LHANELSRRL QEDGAKVTVN SVHPGLIMTN LMRHSFLLMR VLKVFSYVFW KNVPQGAATT CYVALHPSLK GVTGKYFFDC NEEMPSSWAR
301: DKKLAKKLWD FSEKLVKSSL RDLP

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.