CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63546	Soybean	endoplasmic reticulum, mitochondrion, plastid	94.58	96.97
KRH03277	Soybean	plastid	69.46	73.82
VIT_17s0000g08560.t01	Wine grape	plastid	70.94	70.24
CDY12390	Canola	plastid	68.47	69.15
Solyc03g112870.2.1	Tomato	plastid	69.7	69.02
Bra038952.1-P	Field mustard	plastid	68.72	68.89
CDY47555	Canola	plastid	68.97	68.8
PGSC0003DMT400046741	Potato	plastid	69.46	68.78
AT5G33320.1	Thale cress	plastid	67.98	67.65
GSMUA_Achr3P28500_001	Banana	plasma membrane	61.08	67.39
Os09t0297400-01	Rice	plastid	66.5	66.18
Zm00001d032383_P001	Maize	plastid	64.29	66.08
TraesCS5A01G178100.1	Wheat	plastid	65.02	65.84
TraesCS5B01G175700.2	Wheat	golgi	64.78	65.59
Os08t0344600-01	Rice	plastid	65.27	65.11
TraesCS5D01G182500.1	Wheat	plastid	64.29	65.09
EES07792	Sorghum	plastid	63.3	64.74
Zm00001d020004_P002	Maize	plastid	64.53	62.09
GSMUA_Achr1P25520_001	Banana	plastid	58.87	60.05
Zm00001d005542_P001	Maize	plastid	63.55	59.86
GSMUA_Achr8P31900_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	62.81	59.03
HORVU5Hr1G054180.1	Barley	mitochondrion, plastid	63.05	57.53
KRG93252	Soybean	plastid	56.16	55.88
OQU89208	Sorghum	plastid	64.78	55.14
KRH20881	Soybean	plastid	33.0	34.27
KRH11399	Soybean	plastid	33.0	34.27
KRH32944	Soybean	plastid	34.73	33.65
KRH73710	Soybean	plastid	32.51	33.42
KRH13965	Soybean	plastid	34.24	33.25
KRG98852	Soybean	plastid	32.27	33.25
KRH46103	Soybean	mitochondrion	32.27	33.16
KRH14442	Soybean	plastid	32.27	33.16
KRH50117	Soybean	mitochondrion, plastid	31.53	31.53
KRH20388	Soybean	plastid	31.53	31.53
KRH75852	Soybean	cytosol, endoplasmic reticulum, plastid	20.44	23.45
KRH02096	Soybean	plastid	32.51	21.85

Protein Annotations

EntrezGene:100804563	MapMan:24.2.1.1.1	EMBL:ACUP02003516	EnsemblPlantsGene:GLYMA_06G181600	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	UniProt:I1KCF1	EnsemblPlants:KRH54382	ProteinID:KRH54382	ProteinID:KRH54382.1	PFAM:PF03151
PANTHER:PTHR43973	PANTHER:PTHR43973:SF8	SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom	TIGRFAMs:TIGR00817	TMHMM:TMhelix
InterPro:Tpt_PEP_transl	UniParc:UPI00023392D7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:15505866..15510957

Molecular Weight (calculated)

44380.3 Da

IEP (calculated)

10.928

GRAVY (calculated)

0.342

Length

406 amino acids

Sequence
(BLAST)

001: MQSAAFTFSP SLPLRNPSPN SWRRPSLSLR LHAKHSNNNN NSNSTEGVNS NGVSSTSFTR RSWTLLPSSS FKFRPLPSSP PRAAENAVPE SAAAPVENPL
101: FKTLELGALF GLWYLFNIYF NIYNKQVLKA FHYPVTVTVV QFAVGTVLVA FMWGLNLYKR PKLSGAMLGA ILPLAAVHTL GNLFTNMSLG KVAVSFTHTI
201: KAMEPFFSVI LSAMFLGEFP TPWVVGSLVP IVGGVALASV TEASFNWAGF WSAMASNVTN QSRNVLSKKA MVKKEDSMDN ITLFSIITVM SFFLLAPVAI
301: FMEGVKFTPA YLQSAGVNVR QLYIRSLLAA LCFHAYQQVS YMILQRVSPV THSVGNCVKR VVVIVSSVIF FQTPVSPVNA FGTAIALAGV FLYSRVKRIK
401: AKPKTA

Best Arabidopsis Sequence Match ( AT5G33320.1 )
(BLAST)

001: MQSSAVFSLS PSLPLLKPRR LSLRHHPITT AASSSDLNVS PNVVSIPSLS RRSWRLASSD SPLRAWSGVP SPISHSLDTN RFRTAATAVP ESAEEGDNSG
101: KLTKVLELGL LFAMWYLFNI YFNIYNKQVL KALHAPMTVT LVQFAVGSVL ITIMWVLNLY KRPKISGAQL AAILPLAVVH TLGNLFTNMS LGKVSVSFTH
201: TIKAMEPFFS VLLSAMFLGE KPTPWVLGAI VPIVGGVALA SISEVSFNWA GFSSAMASNL TNQSRNVLSK KVMVKKDDSL DNITLFSIIT LMSLVLMAPV
301: TFFTEGIKFT PSYIQSAGVN VKQIYTKSLI AALCFHAYQQ VSYMILARVS PVTHSVGNCV KRVVVIVSSV IFFKTPVSPV NAFGTGIALA GVFLYSRVKG
401: IKPKPKTA

Arabidopsis Description

PPT1Phosphoenolpyruvate/phosphate translocator 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.