Factsheet for Solyc03g112870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046741	Potato	plastid	94.63	94.63
VIT_17s0000g08560.t01	Wine grape	plastid	71.46	71.46
KRH63546	Soybean	endoplasmic reticulum, mitochondrion, plastid	68.78	71.21
KRH03277	Soybean	plastid	65.61	70.42
KRH54382	Soybean	endoplasmic reticulum, mitochondrion, plastid	69.02	69.7
GSMUA_Achr3P28500_001	Banana	plasma membrane	61.46	68.48
Zm00001d032383_P001	Maize	plastid	63.9	66.33
CDY12390	Canola	plastid	64.88	66.17
Bra038952.1-P	Field mustard	plastid	65.12	65.93
CDY47555	Canola	plastid	65.37	65.85
AT5G33320.1	Thale cress	plastid	65.12	65.44
Os09t0297400-01	Rice	plastid	65.12	65.44
EES07792	Sorghum	plastid	62.93	64.99
TraesCS5A01G178100.1	Wheat	plastid	62.68	64.09
TraesCS5B01G175700.2	Wheat	golgi	62.44	63.84
Os08t0344600-01	Rice	plastid	63.17	63.64
TraesCS5D01G182500.1	Wheat	plastid	62.2	63.59
Zm00001d020004_P002	Maize	plastid	64.39	62.56
Zm00001d005542_P001	Maize	plastid	64.39	61.25
GSMUA_Achr1P25520_001	Banana	plastid	59.27	61.06
GSMUA_Achr8P31900_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	63.9	60.65
OQU89208	Sorghum	plastid	64.63	55.56
Solyc02g086650.2.1	Tomato	plastid	53.41	55.16
HORVU5Hr1G054180.1	Barley	mitochondrion, plastid	59.76	55.06
Solyc03g031740.1.1	Tomato	plastid	31.95	34.38
Solyc07g064270.2.1	Tomato	plastid	32.93	34.18
Solyc01g081390.2.1	Tomato	plastid	34.63	33.65
Solyc01g010350.2.1	Tomato	plastid	32.44	32.44
Solyc05g045670.2.1	Tomato	plastid	31.71	32.42
Solyc10g008980.2.1	Tomato	plastid	30.98	30.6
Solyc07g052450.1.1	Tomato	plastid	14.88	30.35

Protein Annotations

MapMan:24.2.1.1.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	GO:GO:0015120	GO:GO:0015121	GO:GO:0015713	GO:GO:0015714	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	GO:GO:0089722	UniProt:K4BKE0	PFAM:PF03151
PANTHER:PTHR43973	PANTHER:PTHR43973:SF8	SUPFAM:SSF103481	EnsemblPlantsGene:Solyc03g112870.2	EnsemblPlants:Solyc03g112870.2.1	InterPro:Sugar_P_trans_dom
TIGRFAMs:TIGR00817	TMHMM:TMhelix	InterPro:Tpt_PEP_transl	UniParc:UPI0002767860	:	:

Description

No Description!

Coordinates

chr3:+:63163619..63167758

Molecular Weight (calculated)

44847.0 Da

IEP (calculated)

10.569

GRAVY (calculated)

0.349

Length

410 amino acids

Sequence
(BLAST)

001: MQSTAISFSP SISLPKKPHN PSSSASFCRF NPLSQPLRFG SLNGSTSRRI NPIRCSADSS SSKLNPNGWI SVPAPVPERQ SEGVEVRATS LPDSAGEAPK
101: SKPLMETVVL GSLFGLWYLF NIYFNIYNKQ VLKAFPYPVT VTLAQFAVGS VLVILMWTLN LYKRPKISGA QLVAILPLAA VHTLGNLFTN MSLGKVSVSF
201: THTIKAMEPF FSVVLSAMFL GEFPTLWVLS SLVPIVGGVG LASMTEASFN WAGFWSAMAS NLTNQSRNVL SKKFMVRKEE SLDNITLFSI ITIMSFFLLA
301: PYAFFTEGVK FTPAFLEAAG MNVNQLYTRS FIAALCFHAY QQVSYMILQR VSPVTHSVGN CVKRVVVIVT SVLFFRTPVS PINGLGTGIA LAGVFLYSRV
401: KRIKAKAKTE

Best Arabidopsis Sequence Match ( AT5G33320.1 )
(BLAST)

001: MQSSAVFSLS PSLPLLKPRR LSLRHHPITT AASSSDLNVS PNVVSIPSLS RRSWRLASSD SPLRAWSGVP SPISHSLDTN RFRTAATAVP ESAEEGDNSG
101: KLTKVLELGL LFAMWYLFNI YFNIYNKQVL KALHAPMTVT LVQFAVGSVL ITIMWVLNLY KRPKISGAQL AAILPLAVVH TLGNLFTNMS LGKVSVSFTH
201: TIKAMEPFFS VLLSAMFLGE KPTPWVLGAI VPIVGGVALA SISEVSFNWA GFSSAMASNL TNQSRNVLSK KVMVKKDDSL DNITLFSIIT LMSLVLMAPV
301: TFFTEGIKFT PSYIQSAGVN VKQIYTKSLI AALCFHAYQQ VSYMILARVS PVTHSVGNCV KRVVVIVSSV IFFKTPVSPV NAFGTGIALA GVFLYSRVKG
401: IKPKPKTA

Arabidopsis Description

PPT1Phosphoenolpyruvate/phosphate translocator 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.