Factsheet for Solyc10g008980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058772	Potato	plastid	96.39	96.39
Zm00001d046001_P001	Maize	plastid	29.16	83.45
HORVU3Hr1G032490.1	Barley	golgi, plasma membrane	66.51	81.42
VIT_10s0003g00300.t01	Wine grape	plastid	77.59	79.31
Bra025037.1-P	Field mustard	mitochondrion, plastid	76.87	78.38
KRH20388	Soybean	plastid	76.39	78.08
KRH50117	Soybean	mitochondrion, plastid	76.39	78.08
CDY33455	Canola	plastid	76.39	77.89
GSMUA_Achr3P03200_001	Banana	plastid	75.9	77.02
CDX77632	Canola	plastid	76.14	76.7
CDY48790	Canola	mitochondrion	74.22	76.43
AT5G46110.4	Thale cress	mitochondrion	75.42	75.42
Zm00001d010043_P001	Maize	cytosol, plasma membrane, plastid	30.36	73.68
TraesCS3D01G168600.1	Wheat	mitochondrion	71.33	73.63
Os01t0239200-01	Rice	plastid	73.98	73.62
TraesCS3B01G192400.1	Wheat	mitochondrion, plastid	71.08	73.38
GSMUA_Achr10P...	Banana	plastid	72.29	73.17
Zm00001d039258_P001	Maize	plastid	71.33	72.37
Zm00001d009028_P001	Maize	plastid	70.6	72.35
EER99986	Sorghum	plastid	70.6	72.17
TraesCS3A01G161300.1	Wheat	golgi	71.08	71.43
Os05t0241200-01	Rice	plastid	67.23	69.06
HORVU1Hr1G016360.1	Barley	plastid	66.51	67.98
TraesCS1D01G078000.1	Wheat	plastid	66.02	67.49
TraesCS1A01G075700.2	Wheat	plastid	65.54	67.16
Solyc01g010350.2.1	Tomato	plastid	65.78	66.59
TraesCS1B01G094300.1	Wheat	plastid	65.06	66.5
OQU77692	Sorghum	plastid	65.54	65.38
CDY53419	Canola	mitochondrion	74.22	59.92
Zm00001d010044_P001	Maize	mitochondrion, plasma membrane	30.36	58.33
CDY04362	Canola	plastid	32.53	56.49
Bra022019.1-P	Field mustard	mitochondrion	73.98	47.89
Solyc03g031740.1.1	Tomato	plastid	31.81	34.65
Solyc07g064270.2.1	Tomato	plastid	31.81	33.42
Solyc05g045670.2.1	Tomato	plastid	32.29	33.42
Solyc02g086650.2.1	Tomato	plastid	30.6	31.99
Solyc03g112870.2.1	Tomato	plastid	30.6	30.98
Solyc01g081390.2.1	Tomato	plastid	31.08	30.57
Solyc07g052450.1.1	Tomato	plastid	13.73	28.36

Protein Annotations

MapMan:24.2.1.1.1	MapMan:3.1.1.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:K4CY74
PFAM:PF03151	PANTHER:PTHR44585	PANTHER:PTHR44585:SF2	SUPFAM:SSF103481	EnsemblPlantsGene:Solyc10g008980.2	EnsemblPlants:Solyc10g008980.2.1
InterPro:Sugar_P_trans_dom	TIGRFAMs:TIGR00817	TMHMM:TMhelix	InterPro:Tpt_PEP_transl	UniParc:UPI000276BBA6	SEG:seg

Description

Triose phosphate/phosphate translocator TPT, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G46110) UniProtKB/Swiss-Prot;Acc:Q9ZSR7]

Coordinates

chr10:+:3003367..3007677

Molecular Weight (calculated)

45031.4 Da

IEP (calculated)

10.066

GRAVY (calculated)

0.514

Length

415 amino acids

Sequence
(BLAST)

001: MESRVLTGGA TAIRGGLPLL RKPAAVMKFT TAATCGSNRD FPAGAVTAKP VGPLIAGPNL IWGRQLRPAI LLEASPKRES IKPCSAAASS SAGSSDSSGE
101: AKIGFFNKAT LTTGFFFFMW YFLNVIFNIL NKKIYNYFPY PYFVSVIHLA VGVVYCLVSW AVGLPKRAPI DSTQLKLLTP VAFCHALGHV TSNVSFAAVA
201: VSFTHTIKAL EPFFNAAASQ FILGQQIPLA LWLSLAPVVL GVSMASLTEL SFNWLGFTSA MISNISFTYR SIYSKKAMTD MDSTNVYAYI SIIALIFCLP
301: PAIFIEGPKL LQYGFNDAIA KVGLTKFITD LFWVGMFYHL YNQVATNTLE RVAPLTHAVG NVLKRVFVIG FSIVIFGNKI STQTGIGTCI AIAGVAIYSF
401: IKAKMEEEKR NLIRA

Best Arabidopsis Sequence Match ( AT5G46110.4 )
(BLAST)

001: MESRVLLRAT ANVVGIPKLR RPIGAIHRQF STASSSSFSV KPIGGIGEGA NLISGRQLRP ILLLDSSAIN GGEKREILKP VKAAAAEGGD TAGDAKVGFL
101: AKYPWLVTGF FFFMWYFLNV IFNILNKKIY NYFPYPYFVS VIHLFVGVVY CLISWSVGLP KRAPIDSNLL KVLIPVAVCH ALGHVTSNVS FAAVAVSFTH
201: TIKALEPFFN AAASQFIMGQ SIPITLWLSL APVVLGVAMA SLTELSFNWL GFISAMISNI SFTYRSIFSK KAMTDMDSTN VYAYISIIAL FVCIPPAIIV
301: EGPKLLNHGF ADAIAKVGMT KFISDLFWVG MFYHLYNQLA TNTLERVAPL THAVGNVLKR VFVIGFSIVI FGNKISTQTG IGTGIAIAGV AMYSIIKAKI
401: EEEKRVTRKE SIESS

Arabidopsis Description

APE2Glucose-6-phosphate/phosphate translocator-like protein [Source:UniProtKB/TrEMBL;Acc:A0A219I0W9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.