Factsheet for TraesCS3A01G161300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G168600.1	Wheat	mitochondrion	96.13	98.76
TraesCS3B01G192400.1	Wheat	mitochondrion, plastid	95.64	98.26
HORVU3Hr1G032490.1	Barley	golgi, plasma membrane	79.66	97.05
Zm00001d046001_P001	Maize	plastid	30.75	87.59
Os01t0239200-01	Rice	plastid	84.75	83.93
Zm00001d039258_P001	Maize	plastid	81.84	82.64
Zm00001d009028_P001	Maize	plastid	80.15	81.73
EER99986	Sorghum	plastid	79.9	81.28
VIT_10s0003g00300.t01	Wine grape	plastid	73.37	74.63
GSMUA_Achr3P03200_001	Banana	plastid	72.88	73.59
KRH20388	Soybean	plastid	71.43	72.66
TraesCS1A01G075700.2	Wheat	plastid	70.94	72.35
KRH50117	Soybean	mitochondrion, plastid	70.7	71.92
GSMUA_Achr10P...	Banana	plastid	71.19	71.71
Solyc10g008980.2.1	Tomato	plastid	71.43	71.08
Bra025037.1-P	Field mustard	mitochondrion, plastid	69.98	71.01
CDY33455	Canola	plastid	69.73	70.76
CDX77632	Canola	plastid	70.22	70.39
CDY48790	Canola	mitochondrion	68.52	70.22
PGSC0003DMT400058772	Potato	plastid	70.46	70.12
AT5G46110.4	Thale cress	mitochondrion	70.46	70.12
CDY53419	Canola	mitochondrion	69.73	56.03
CDY04362	Canola	plastid	30.27	52.3
Bra022019.1-P	Field mustard	mitochondrion	69.01	44.46
TraesCS2A01G220400.1	Wheat	plastid	31.48	33.85
TraesCS7A01G287500.1	Wheat	golgi, unclear	31.23	33.51
TraesCS5A01G178100.1	Wheat	plastid	29.3	30.17
TraesCS3A01G130300.1	Wheat	plastid	27.84	28.97
TraesCS1A01G115200.1	Wheat	plastid	27.12	27.52

Protein Annotations

MapMan:24.2.1.1.1	MapMan:3.1.1.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	PFAM:PF03151
PANTHER:PTHR44585	PANTHER:PTHR44585:SF1	SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom	TIGRFAMs:TIGR00817	TMHMM:TMhelix
InterPro:Tpt_PEP_transl	EnsemblPlantsGene:TraesCS3A01G161300	EnsemblPlants:TraesCS3A01G161300.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:-:162761288..162765197

Molecular Weight (calculated)

44624.4 Da

IEP (calculated)

10.105

GRAVY (calculated)

0.568

Length

413 amino acids

Sequence
(BLAST)

001: MPALGTLSAG GAAAGVAGLL RLRRGPALAS PLPAAARAGA VHDGAQLVWG RQLRPALVLP AGLLPLQASK RLTLRPPAAS AEPAGEAKSP GLLEKYPAIT
101: TGFFFFMWYF LNVIFNILNK KIYNYFPYPY FVSVIHLLVG VVYCLLSWAV GLPKRAPINA TLLKLLFPVA LCHALGHVTS NVSFATVAVS FAHTIKALEP
201: FFNAAATQFV LGQTVPLSLW LSLAPVVLGV SMASLTELSF SWKGFINAMI SNISFTYRSI YSKKAMTDMD STNVYAYISI IALVVCIPPA LIIEGPQLMQ
301: YGLNDAIAKV GMTKFVSDLF LVGLFYHLYN QIATNTLERV APLTHAVGNV LKRVFVIGFS IIIFGNKITT QTGIGTCVAI AGVALYSYIK AKIEEEKRER
401: RRPPDEVTAV NMV

Best Arabidopsis Sequence Match ( AT5G46110.4 )
(BLAST)

001: MESRVLLRAT ANVVGIPKLR RPIGAIHRQF STASSSSFSV KPIGGIGEGA NLISGRQLRP ILLLDSSAIN GGEKREILKP VKAAAAEGGD TAGDAKVGFL
101: AKYPWLVTGF FFFMWYFLNV IFNILNKKIY NYFPYPYFVS VIHLFVGVVY CLISWSVGLP KRAPIDSNLL KVLIPVAVCH ALGHVTSNVS FAAVAVSFTH
201: TIKALEPFFN AAASQFIMGQ SIPITLWLSL APVVLGVAMA SLTELSFNWL GFISAMISNI SFTYRSIFSK KAMTDMDSTN VYAYISIIAL FVCIPPAIIV
301: EGPKLLNHGF ADAIAKVGMT KFISDLFWVG MFYHLYNQLA TNTLERVAPL THAVGNVLKR VFVIGFSIVI FGNKISTQTG IGTGIAIAGV AMYSIIKAKI
401: EEEKRVTRKE SIESS

Arabidopsis Description

APE2Glucose-6-phosphate/phosphate translocator-like protein [Source:UniProtKB/TrEMBL;Acc:A0A219I0W9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.