CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20388	Soybean	plastid	97.29	97.29
Zm00001d046001_P001	Maize	plastid	30.54	85.52
VIT_10s0003g00300.t01	Wine grape	plastid	84.24	84.24
HORVU3Hr1G032490.1	Barley	golgi, plasma membrane	68.72	82.3
GSMUA_Achr3P03200_001	Banana	plastid	81.03	80.44
Bra025037.1-P	Field mustard	mitochondrion, plastid	80.05	79.85
CDY33455	Canola	plastid	79.8	79.61
CDY48790	Canola	mitochondrion	78.33	78.91
CDX77632	Canola	plastid	79.06	77.91
GSMUA_Achr10P...	Banana	plastid	78.33	77.56
AT5G46110.4	Thale cress	mitochondrion	78.57	76.87
PGSC0003DMT400058772	Potato	plastid	78.33	76.63
Solyc10g008980.2.1	Tomato	plastid	78.08	76.39
EER99986	Sorghum	plastid	74.38	74.38
TraesCS3D01G168600.1	Wheat	mitochondrion	72.91	73.63
Os01t0239200-01	Rice	plastid	75.37	73.38
TraesCS3B01G192400.1	Wheat	mitochondrion, plastid	72.41	73.13
Zm00001d010043_P001	Maize	cytosol, plasma membrane, plastid	30.79	73.1
Zm00001d039258_P001	Maize	plastid	73.4	72.86
Zm00001d009028_P001	Maize	plastid	72.66	72.84
TraesCS3A01G161300.1	Wheat	golgi	71.92	70.7
TraesCS1A01G075700.2	Wheat	plastid	70.2	70.37
HORVU1Hr1G016360.1	Barley	plastid	70.2	70.2
TraesCS1D01G078000.1	Wheat	plastid	70.2	70.2
Os05t0241200-01	Rice	plastid	69.7	70.05
TraesCS1B01G094300.1	Wheat	plastid	69.7	69.7
OQU77692	Sorghum	plastid	70.2	68.51
CDY53419	Canola	mitochondrion	78.82	62.26
Zm00001d010044_P001	Maize	mitochondrion, plasma membrane	32.76	61.57
CDY04362	Canola	plastid	32.76	55.65
Bra022019.1-P	Field mustard	mitochondrion	78.57	49.77
KRH46103	Soybean	mitochondrion	32.76	33.67
KRH20881	Soybean	plastid	32.27	33.5
KRH11399	Soybean	plastid	32.27	33.5
KRH13965	Soybean	plastid	34.24	33.25
KRG98852	Soybean	plastid	32.27	33.25
KRH32944	Soybean	plastid	34.24	33.17
KRH73710	Soybean	plastid	31.77	32.66
KRH14442	Soybean	plastid	31.53	32.41
KRH63546	Soybean	endoplasmic reticulum, mitochondrion, plastid	31.53	32.32
KRH03277	Soybean	plastid	30.3	32.2
KRH54382	Soybean	endoplasmic reticulum, mitochondrion, plastid	31.53	31.53
KRG93252	Soybean	plastid	30.3	30.15
KRH75852	Soybean	cytosol, endoplasmic reticulum, plastid	19.21	22.03
KRH02096	Soybean	plastid	32.76	22.02

Protein Annotations

EntrezGene:100794336	MapMan:24.2.1.1.1	MapMan:3.1.1.1	EMBL:ACUP02004662	EnsemblPlantsGene:GLYMA_07G201300	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	UniProt:I1KLP7	EnsemblPlants:KRH50117	ProteinID:KRH50117	ProteinID:KRH50117.1
PFAM:PF03151	PANTHER:PTHR44585	PANTHER:PTHR44585:SF2	SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom	TIGRFAMs:TIGR00817
TMHMM:TMhelix	InterPro:Tpt_PEP_transl	UniParc:UPI00023C66EB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:36987769..36993208

Molecular Weight (calculated)

44005.1 Da

IEP (calculated)

9.865

GRAVY (calculated)

0.576

Length

406 amino acids

Sequence
(BLAST)

001: MESRVLSRAG TLSSLPHLRK PPREAVSSAS LVAVKAVGSV ADGGNLIWGR QLRPELCSPV LKREAVLLRP CLAAASSPAE GSDSAGEAKV APAGFFDKYP
101: ALVTGFFFFT WYFLNVIFNI LNKKIYNYFP YPYFVSVIHL FVGVAYCLVS WAVGLPKRAP IDSNLLKLLI PVAVCHALGH VTSNVSFAAV AVSFTHTIKA
201: LEPFFNAAAS QFILGQSIPI TLWLSLAPVV IGVSMASLTE LSFNWVGFIS AMISNISFTY RSIYSKKAMT DMDSTNIYAY ISIIALIVCI PPAVILEGPT
301: LLKNGFNDAI AKVGLVKFVS DLFWVGMFYH LYNQVATNTL ERVAPLTHAV GNVLKRVFVI GFSIIVFGNK ISTQTGIGTA IAIAGVALYS FIKARMEEEK
401: RQAKAA

Best Arabidopsis Sequence Match ( AT5G46110.1 )
(BLAST)

001: MESRVLLRAT ANVVGIPKLR RPIGAIHRQF STASSSSFSV KPIGGIGEGA NLISGRQLRP ILLLDSSAIN GGEKREILKP VKAAAAEGGD TAGDAKVGFL
101: AKYPWLVTGF FFFMWYFLNV IFNILNKKIY NYFPYPYFVS VIHLFVGVVY CLISWSVGLP KRAPIDSNLL KVLIPVAVCH ALGHVTSNVS FAAVAVSFTH
201: TIKALEPFFN AAASQFIMGQ SIPITLWLSL APVVLGVAMA SLTELSFNWL GFISAMISNI SFTYRSIFSK KAMTDMDSTN VYAYISIIAL FVCIPPAIIV
301: EGPKLLNHGF ADAIAKVGMT KFISDLFWVG MFYHLYNQLA TNTLERVAPL THAVGNVLKR VFVIGFSIVI FGNKISTQTG IGTGIAIAGV AMYSIIKAKI
401: EEEKRQGKKA

Arabidopsis Description

APE2Glucose-6-phosphate/phosphate translocator-like protein [Source:UniProtKB/TrEMBL;Acc:A0A219I0W9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.