CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, endoplasmic reticulum, mitochondrion

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54382	Soybean	endoplasmic reticulum, mitochondrion, plastid	96.97	94.58
KRH03277	Soybean	plastid	71.21	73.82
VIT_17s0000g08560.t01	Wine grape	plastid	72.47	70.0
Solyc03g112870.2.1	Tomato	plastid	71.21	68.78
CDY12390	Canola	plastid	69.7	68.66
PGSC0003DMT400046741	Potato	plastid	70.96	68.54
Bra038952.1-P	Field mustard	plastid	69.95	68.4
CDY47555	Canola	plastid	69.95	68.06
GSMUA_Achr3P28500_001	Banana	plasma membrane	62.37	67.12
AT5G33320.1	Thale cress	plastid	68.94	66.91
TraesCS5A01G178100.1	Wheat	plastid	65.91	65.09
Os09t0297400-01	Rice	plastid	66.92	64.95
TraesCS5B01G175700.2	Wheat	golgi	65.66	64.84
Zm00001d032383_P001	Maize	plastid	64.65	64.81
TraesCS5D01G182500.1	Wheat	plastid	65.4	64.59
Os08t0344600-01	Rice	plastid	65.91	64.13
EES07792	Sorghum	plastid	63.89	63.73
Zm00001d020004_P002	Maize	plastid	65.15	61.14
Zm00001d005542_P001	Maize	plastid	64.39	59.16
GSMUA_Achr1P25520_001	Banana	plastid	59.34	59.05
GSMUA_Achr8P31900_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	63.89	58.56
HORVU5Hr1G054180.1	Barley	mitochondrion, plastid	63.89	56.85
KRG93252	Soybean	plastid	56.82	55.15
OQU89208	Sorghum	plastid	65.4	54.3
KRH20881	Soybean	plastid	33.59	34.02
KRH11399	Soybean	plastid	33.59	34.02
KRH32944	Soybean	plastid	35.35	33.41
KRH13965	Soybean	plastid	35.1	33.25
KRH73710	Soybean	plastid	33.08	33.16
KRH14442	Soybean	plastid	32.83	32.91
KRG98852	Soybean	plastid	32.58	32.74
KRH46103	Soybean	mitochondrion	32.58	32.66
KRH20388	Soybean	plastid	32.32	31.53
KRH50117	Soybean	mitochondrion, plastid	32.32	31.53
KRH75852	Soybean	cytosol, endoplasmic reticulum, plastid	20.71	23.16
KRH02096	Soybean	plastid	33.08	21.69

Protein Annotations

MapMan:24.2.1.1.1	EntrezGene:732612	EMBL:ACUP02002700	EMBL:BT098049	UniProt:C6TK44	EnsemblPlantsGene:GLYMA_04G184300
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlants:KRH63546	ProteinID:KRH63546	ProteinID:KRH63546.1
PFAM:PF03151	PANTHER:PTHR43973	PANTHER:PTHR43973:SF8	SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom	TIGRFAMs:TIGR00817
TMHMM:TMhelix	InterPro:Tpt_PEP_transl	UniParc:UPI0001B16A6C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:45354077..45358279

Molecular Weight (calculated)

43438.2 Da

IEP (calculated)

10.768

GRAVY (calculated)

0.387

Length

396 amino acids

Sequence
(BLAST)

001: MQSAAFTFSP SLPLRNPSPN YWRRPSLSLR LSAKHGNSNS DDVNSNGVSS TFFTRRSWTL PPSSSFKFRP LPPRAAESAV PESAPVENPL FKTLELGALF
101: GLWYLFNIYF NIYNKQVLKA FHYPVTVTVV QFAVGTVLVA FMWGLNLYKR PKLSGAMLGA ILPLAAVHTL GNLFTNMSLG KVAVSFTHTI KAMEPFFSVV
201: LSAMFLGEFP TPWVVGSLVP IVGGVALASV TEASFNWAGF WSAMASNVTN QSRNVLSKKA MVNKEDSMDN ITLFSIITVM SFFLLAPVAI FMEGVKFTPA
301: YLQSAGVNVR QLYIRSLLAA LCFHAYQQVS YMILQRVSPV THSVGNCVKR VVVIVSSVIF FQTPVSPVNA FGTAIALAGV FLYSRVKRIK AKPKTA

Best Arabidopsis Sequence Match ( AT5G33320.1 )
(BLAST)

001: MQSSAVFSLS PSLPLLKPRR LSLRHHPITT AASSSDLNVS PNVVSIPSLS RRSWRLASSD SPLRAWSGVP SPISHSLDTN RFRTAATAVP ESAEEGDNSG
101: KLTKVLELGL LFAMWYLFNI YFNIYNKQVL KALHAPMTVT LVQFAVGSVL ITIMWVLNLY KRPKISGAQL AAILPLAVVH TLGNLFTNMS LGKVSVSFTH
201: TIKAMEPFFS VLLSAMFLGE KPTPWVLGAI VPIVGGVALA SISEVSFNWA GFSSAMASNL TNQSRNVLSK KVMVKKDDSL DNITLFSIIT LMSLVLMAPV
301: TFFTEGIKFT PSYIQSAGVN VKQIYTKSLI AALCFHAYQQ VSYMILARVS PVTHSVGNCV KRVVVIVSSV IFFKTPVSPV NAFGTGIALA GVFLYSRVKG
401: IKPKPKTA

Arabidopsis Description

PPT1Phosphoenolpyruvate/phosphate translocator 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.