Factsheet for VIT_17s0000g08560.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046741	Potato	plastid	73.17	73.17
KRH63546	Soybean	endoplasmic reticulum, mitochondrion, plastid	70.0	72.47
Solyc03g112870.2.1	Tomato	plastid	71.46	71.46
KRH54382	Soybean	endoplasmic reticulum, mitochondrion, plastid	70.24	70.94
KRH03277	Soybean	plastid	65.61	70.42
GSMUA_Achr3P28500_001	Banana	plasma membrane	62.93	70.11
CDY12390	Canola	plastid	67.56	68.91
CDY47555	Canola	plastid	68.29	68.8
Bra038952.1-P	Field mustard	plastid	67.8	68.64
AT5G33320.1	Thale cress	plastid	67.07	67.4
TraesCS5A01G178100.1	Wheat	plastid	64.63	66.08
TraesCS5B01G175700.2	Wheat	golgi	64.15	65.59
TraesCS5D01G182500.1	Wheat	plastid	63.9	65.34
Zm00001d032383_P001	Maize	plastid	62.44	64.81
Os09t0297400-01	Rice	plastid	64.39	64.71
Os08t0344600-01	Rice	plastid	62.93	63.39
GSMUA_Achr1P25520_001	Banana	plastid	61.46	63.32
EES07792	Sorghum	plastid	61.22	63.22
Zm00001d020004_P002	Maize	plastid	64.15	62.32
GSMUA_Achr8P31900_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	64.63	61.34
Zm00001d005542_P001	Maize	plastid	63.41	60.32
VIT_14s0066g01000.t01	Wine grape	mitochondrion, plastid	61.46	58.47
HORVU5Hr1G054180.1	Barley	mitochondrion, plastid	61.22	56.4
OQU89208	Sorghum	plastid	63.66	54.72
VIT_19s0177g00300.t01	Wine grape	plastid	31.95	33.68
VIT_15s0024g01440.t01	Wine grape	plastid	33.66	32.32
VIT_10s0116g00760.t01	Wine grape	plastid	30.73	32.06
VIT_10s0003g00300.t01	Wine grape	plastid	30.98	31.28
VIT_01s0011g00590.t01	Wine grape	plastid	29.27	29.13
VIT_01s0011g00600.t01	Wine grape	plastid	29.27	28.99

Protein Annotations

EntrezGene:100248370	wikigene:100248370	MapMan:24.2.1.1.1	ProteinID:CBI15015	ProteinID:CBI15015.3	UniProt:D7SHQ5
EMBL:FN594950	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EntrezGene:LOC100248370	wikigene:LOC100248370
PFAM:PF03151	PANTHER:PTHR43973	PANTHER:PTHR43973:SF8	SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom	TIGR:TC61795
TIGR:TC64419	TIGRFAMs:TIGR00817	TMHMM:TMhelix	InterPro:Tpt_PEP_transl	UniParc:UPI0001985283	ArrayExpress:VIT_17s0000g08560
EnsemblPlantsGene:VIT_17s0000g08560	EnsemblPlants:VIT_17s0000g08560.t01	unigene:Vvi.9601	RefSeq:XP_002282424	RefSeq:XP_002282424.1	SEG:seg

Description

No Description!

Coordinates

chr17:-:9846987..9851851

Molecular Weight (calculated)

44513.6 Da

IEP (calculated)

10.737

GRAVY (calculated)

0.440

Length

410 amino acids

Sequence
(BLAST)

001: MQSTAFTFSP SISSISLSKP LKPAASLSRF RHISLSSSSS KSPDLASSNG VSASSSVRTP AALSSSRFGA FGSAPYLVED RRRGDLTVRA SSVPESAGES
101: EKSGNLVQTL QLGLLFGLWY LFNIYFNIYN KQVLKVYPFP VTVTVVQFAV GTVLVILMWG LNLYKRPKIS SSQLVAILPL AVVHTLGNLF TNMSLGKVSV
201: SFTHTIKAME PFFSVVLSAM FLGEFPTIWV LSSLLPIVGG VALASATEAS FNWSGFWSAM ASNLTNQSRN VLSKKFMIKK EDSLDNITLF SIITIMSFIL
301: LAPVSIFMEG INFTPSYLQS AGLNMGQIYK RSLIAALCFH AYQQVSYMIL QRVSPVTHSV GNCVKRVVVI VTSVLFFRTP VSPVNSLGTG VALAGVFLYS
401: RVKRIKPKTA

Best Arabidopsis Sequence Match ( AT5G33320.1 )
(BLAST)

001: MQSSAVFSLS PSLPLLKPRR LSLRHHPITT AASSSDLNVS PNVVSIPSLS RRSWRLASSD SPLRAWSGVP SPISHSLDTN RFRTAATAVP ESAEEGDNSG
101: KLTKVLELGL LFAMWYLFNI YFNIYNKQVL KALHAPMTVT LVQFAVGSVL ITIMWVLNLY KRPKISGAQL AAILPLAVVH TLGNLFTNMS LGKVSVSFTH
201: TIKAMEPFFS VLLSAMFLGE KPTPWVLGAI VPIVGGVALA SISEVSFNWA GFSSAMASNL TNQSRNVLSK KVMVKKDDSL DNITLFSIIT LMSLVLMAPV
301: TFFTEGIKFT PSYIQSAGVN VKQIYTKSLI AALCFHAYQQ VSYMILARVS PVTHSVGNCV KRVVVIVSSV IFFKTPVSPV NAFGTGIALA GVFLYSRVKG
401: IKPKPKTA

Arabidopsis Description

PPT1Phosphoenolpyruvate/phosphate translocator 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.