Factsheet for VIT_19s0177g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90029	Sorghum	cytosol, plasma membrane, vacuole	56.56	88.35
Os07t0523600-01	Rice	plastid	62.21	88.0
Os07t0523965-01	Rice	plasma membrane	62.21	88.0
VIT_10s0116g00760.t01	Wine grape	plastid	80.21	79.39
KRG98852	Soybean	plastid	79.69	78.68
KRH46103	Soybean	mitochondrion	79.69	78.48
KRH14442	Soybean	plastid	76.09	74.94
KRH73710	Soybean	plastid	75.06	73.92
Solyc03g031740.1.1	Tomato	plastid	71.47	72.97
TraesCS2A01G220400.1	Wheat	plastid	70.95	71.88
TraesCS2B01G245900.1	Wheat	plastid	70.44	71.35
Zm00001d021653_P001	Maize	plastid	70.18	69.82
Zm00001d006511_P002	Maize	plastid	70.69	65.32
TraesCS2D01G226000.2	Wheat	plastid	70.18	61.63
HORVU2Hr1G045900.2	Barley	plastid	70.69	60.44
Os07t0523400-01	Rice	plasma membrane	37.53	51.41
VIT_15s0024g01440.t01	Wine grape	plastid	44.22	40.28
VIT_01s0011g00600.t01	Wine grape	plastid	36.25	34.06
VIT_10s0003g00300.t01	Wine grape	plastid	33.68	32.27
VIT_17s0000g08560.t01	Wine grape	plastid	33.68	31.95
VIT_01s0011g00590.t01	Wine grape	plastid	31.88	30.1
VIT_14s0066g01000.t01	Wine grape	mitochondrion, plastid	31.62	28.54

Protein Annotations

EntrezGene:100258996	wikigene:100258996	MapMan:24.2.1.1.1	ProteinID:AJV90959.1	ProteinID:CCB48808	ProteinID:CCB48808.1
UniProt:F6H9B5	EMBL:FN595498	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EntrezGene:LOC100258996
wikigene:LOC100258996	PFAM:PF03151	PANTHER:PTHR43973	PANTHER:PTHR43973:SF1	SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom
TIGR:TC66675	TIGRFAMs:TIGR00817	TMHMM:TMhelix	InterPro:Tpt_PEP_transl	UniParc:UPI0001985527	ArrayExpress:VIT_19s0177g00300
EnsemblPlantsGene:VIT_19s0177g00300	EnsemblPlants:VIT_19s0177g00300.t01	unigene:Vvi.6153	RefSeq:XP_002281493	RefSeq:XP_002281493.1	SEG:seg

Description

GPT1 [Source:UniProtKB/TrEMBL;Acc:F6H9B5]

Coordinates

chr19:+:6153044..6156921

Molecular Weight (calculated)

42691.5 Da

IEP (calculated)

10.167

GRAVY (calculated)

0.443

Length

389 amino acids

Sequence
(BLAST)

001: MICSIKQSVS SLQALTRSDF YQRKSPVKSL SLPSVVGGTS PVKPLHLAPV RGLGFGLIED LRVRRPLIRC EAYEADRSEP VESDVVKGRS EAAKKVKIGL
101: YFATWWALNV VFNIYNKKVL NAFPYPWLTS TLSLATGSLM MLISWATRIA ETPKTDFAFW KTLFPVAVAH TIGHVAATVS MSKVAVSFTH IIKSGEPAFS
201: VLVSRFLLGE SFPTSVYFSL IPIIGGCALA AVTELNFNMI GFMGAMISNL AFVFRNIFSK RGMKGKSVSG MNYYACLSIM SLLILTPFAI AVEGPQMWAA
301: GWQNAVSQIG PHFVWWVAAQ SVFYHLYNQV SYMSLDEISP LTFSIGNTMK RISVIVSSII IFHTPVQPIN ALGAAIAILG TFLYSQAKQ

Best Arabidopsis Sequence Match ( AT5G54800.1 )
(BLAST)

001: MVLSVKQTLS PKIGLFRRNP SSSLGRSPVS LSFPSTELPK RTVLAVSKPL HLSSSLRAKS PVVRCEAYEA DRSEPHPIGD DAAAAETKSE AAKKLKIGIY
101: FATWWALNVV FNIYNKKVLN AYPYPWLTST LSLAAGSLMM LISWAVGIVE TPKTDFDFWK TLFPVAVAHT IGHVAATVSM SKVAVSFTHI IKSGEPAFSV
201: LVSRFILGET FPTSVYLSLI PIIGGCALSA LTELNFNMIG FMGAMISNLA FVFRNIFSKK GMKGKSVSGM NYYACLSMLS LLILTPFAIA VEGPQMWVDG
301: WQTALATVGP QFVWWVVAQS VFYHLYNQVS YMSLDQISPL TFSVGNTMKR ISVIVSSIII FRTPVQPVNA LGAAIAILGT FLYSQAKL

Arabidopsis Description

GPT1GPT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UL59]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.