CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23808	Soybean	cytosol	76.87	77.64
HORVU7Hr1G001010.2	Barley	cytosol, plasma membrane	22.89	57.86
VIT_16s0022g00640.t01	Wine grape	cytosol	52.49	53.42
Solyc03g083970.2.1	Tomato	nucleus	50.25	51.14
PGSC0003DMT400035992	Potato	cytosol	51.24	51.12
VIT_19s0140g00180.t01	Wine grape	mitochondrion	12.69	51.0
VIT_19s0140g00160.t01	Wine grape	mitochondrion	12.69	51.0
GSMUA_Achr2P17880_001	Banana	nucleus	33.58	49.63
CDY58005	Canola	cytosol, mitochondrion, nucleus	45.77	44.02
TraesCS5A01G047200.1	Wheat	nucleus	18.41	41.11
AT5G62390.1	Thale cress	cytosol	45.52	41.03
CDX79075	Canola	cytosol, nucleus, plastid	44.28	39.47
CDX82838	Canola	cytosol	43.78	39.46
Bra013539.1-P	Field mustard	cytosol	44.03	38.9
GSMUA_AchrUn_...	Banana	cytosol	39.3	36.49
Zm00001d045596_P001	Maize	plasma membrane	33.83	33.01
EER89037	Sorghum	golgi, nucleus, plastid	33.08	32.28
EES04331	Sorghum	cytosol	33.08	31.82
TraesCS7D01G010300.1	Wheat	golgi, nucleus	31.34	31.03
Zm00001d014946_P001	Maize	plasma membrane	30.6	30.3
Os06t0104400-01	Rice	plasma membrane	31.59	30.09
TraesCS7A01G010500.1	Wheat	nucleus	30.85	29.88
Os02t0105500-01	Rice	cytosol	27.86	28.14

Protein Annotations

EntrezGene:100820124	MapMan:35.1	UniProt:A0A0R4J460	EMBL:ACUP02006014	InterPro:BAG_dom_sf	InterPro:BAG_domain
ncoils:Coil	EnsemblPlantsGene:GLYMA_09G231200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0051087
InterPro:IPR000048	InterPro:IPR003103	InterPro:IPR036533	InterPro:IQ_motif_EF-hand-BS	EnsemblPlants:KRH39973	ProteinID:KRH39973
ProteinID:KRH39973.1	PFAM:PF02179	PFscan:PS50096	PANTHER:PTHR33322	PANTHER:PTHR33322:SF3	SUPFAM:SSF63491
UniParc:UPI00018C6ED5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:45459527..45462382

Molecular Weight (calculated)

46355.4 Da

IEP (calculated)

10.048

GRAVY (calculated)

-0.717

Length

402 amino acids

Sequence
(BLAST)

001: MSRFRRFELI EQPPFFHSCY SFPSFVLQDS LSLDLDLLPL PSHFDAFADL VHAPSFAYRR VERHLENELR LQSLSDRVAE LESRFDRVLG GDRKYTWTAE
101: IKGAEKNGFD RKYKWVAEVA EEEDKKKKKN KKKQVKVLKD KSARWTLQLE NEDAEEEEEK KKKLLKGVAR NVKWTAEITG KGENSGSSRK YTFQVQSGDA
201: EKKEKKNKGN GNGLRIVEIQ EPIGHRDVVL RQAFAKRFGA VQNERGKKKD LSPQDAALLI QISFRAYLIR RSKALRALRE LAIAKSKLKE IRAQFNNFSY
301: RRHVARDAEE RQRFSEKIIV LLLTVDAIEG SDIMVRSAKR SMVDELEAML DVVDPQPGGR SASLYFKRRT FDMPDGVIRK EIEEGVAQVV QMLEEAENSS
401: EA

Best Arabidopsis Sequence Match ( AT5G62390.1 )
(BLAST)

001: MTLFHRLDLI DPYTCTPLIV RETSIVEPSS LFLGFPSFID EDIEDLFEFS SPNPLDLFET VTDLVKIKKS PSSCKYKVIR RRLEPEYPLK YLCDRVSDLE
101: SKFDRLVSPK SDRKYTLTKE IKGSGERKYK WEAEIQGPLE RKYKLEAEIE GSGERKYRWT TEIKGGKKDE EGLKLAALKK EKAKAKAIAA AEAEKKKNKN
201: KKKSYNWTTE VKSERENGEV SHTYIIKATT GGEKKKKHEE KEKKEKIETK SKKKEKTRVV VIEEEEEEDD ESSEHGAIVL RKAFSRRNGA VRTKKGKNKE
301: MPPEYAAVMI QRAFKAYLIR RSKSLRALRD LAIAKTKLKE LRASFHNFSY RRLIARDGEE RQKFSEKIIV LLLTVDAIEG VDVMVRGAKR SMVDELEAML
401: DVVDPQPQGK SLSMRRRTFD MPDSLIRKEI AEGVTQIVQM LETEEE

Arabidopsis Description

BAG7BAG family molecular chaperone regulator 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.