Factsheet for Solyc03g083970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035992	Potato	cytosol	87.59	85.86
HORVU7Hr1G001010.2	Barley	cytosol, plasma membrane	24.81	61.64
VIT_16s0022g00640.t01	Wine grape	cytosol	53.42	53.42
VIT_19s0140g00180.t01	Wine grape	mitochondrion	13.42	53.0
VIT_19s0140g00160.t01	Wine grape	mitochondrion	13.16	52.0
KRH23808	Soybean	cytosol	50.63	50.25
KRH39973	Soybean	nucleus	51.14	50.25
GSMUA_Achr2P17880_001	Banana	nucleus	32.66	47.43
TraesCS5A01G047200.1	Wheat	nucleus	18.99	41.67
CDY58005	Canola	cytosol, mitochondrion, nucleus	43.54	41.15
AT5G62390.1	Thale cress	cytosol	44.56	39.46
CDX82838	Canola	cytosol	42.78	37.89
CDX79075	Canola	cytosol, nucleus, plastid	42.78	37.47
Bra013539.1-P	Field mustard	cytosol	43.04	37.36
GSMUA_AchrUn_...	Banana	cytosol	39.49	36.03
EER89037	Sorghum	golgi, nucleus, plastid	34.68	33.25
Zm00001d045596_P001	Maize	plasma membrane	34.68	33.25
TraesCS7D01G010300.1	Wheat	golgi, nucleus	33.16	32.27
TraesCS7A01G010500.1	Wheat	nucleus	33.42	31.81
EES04331	Sorghum	cytosol	33.42	31.58
Zm00001d014946_P001	Maize	plasma membrane	32.15	31.28
Os06t0104400-01	Rice	plasma membrane	32.41	30.33
Os02t0105500-01	Rice	cytosol	27.59	27.39

Protein Annotations

MapMan:35.1	InterPro:BAG_domain	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009266	GO:GO:0009506	GO:GO:0009605
GO:GO:0009607	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0034605	GO:GO:0034620
GO:GO:0043207	GO:GO:0051087	GO:GO:0070417	InterPro:IPR003103	UniProt:K4BIH2	PFAM:PF02179
PANTHER:PTHR33322	PANTHER:PTHR33322:SF3	EnsemblPlantsGene:Solyc03g083970.2	EnsemblPlants:Solyc03g083970.2.1	UniParc:UPI0002768EDA	SEG:seg

Description

No Description!

Coordinates

chr3:-:53922432..53925268

Molecular Weight (calculated)

45281.6 Da

IEP (calculated)

9.988

GRAVY (calculated)

-0.629

Length

395 amino acids

Sequence
(BLAST)

001: MSRFRRFDII DYSSSPSFFT PKTLLLNPYF HIEDELDCTL DLICPKPYAP NTFLDLENFD SITDLIQIET TPFYSTTRRV QHRIGLGTEL QCLSDRVTAL
101: ERMLTEKKKK NKIGERKYTW TAEIKSPEKD GVDRKYKWIA EVKDGKKKGA LDKNYKFSAE IKGKGDDSRS YSFKASNVTD SDSDSDESQK KEKKDKMKKK
201: KKSVGCTRLV EIEEPTHHGA LVLRQVFAKR VEKRRGKRKE LSPQDAALAI QMSFRAYLIK RSQALRALRE LAIAKTKLKE LRALFNNFTY RRRVARDAEE
301: RQRFSEKIIV LLLTVDAIEG VDMMVRSAKK SIVDELEAML DVIDPQPGGR PLSVARRRTF DMPDGAIQKE LAAGVAQVVR MLDESNGAET FEGCL

Best Arabidopsis Sequence Match ( AT5G62390.1 )
(BLAST)

001: MTLFHRLDLI DPYTCTPLIV RETSIVEPSS LFLGFPSFID EDIEDLFEFS SPNPLDLFET VTDLVKIKKS PSSCKYKVIR RRLEPEYPLK YLCDRVSDLE
101: SKFDRLVSPK SDRKYTLTKE IKGSGERKYK WEAEIQGPLE RKYKLEAEIE GSGERKYRWT TEIKGGKKDE EGLKLAALKK EKAKAKAIAA AEAEKKKNKN
201: KKKSYNWTTE VKSERENGEV SHTYIIKATT GGEKKKKHEE KEKKEKIETK SKKKEKTRVV VIEEEEEEDD ESSEHGAIVL RKAFSRRNGA VRTKKGKNKE
301: MPPEYAAVMI QRAFKAYLIR RSKSLRALRD LAIAKTKLKE LRASFHNFSY RRLIARDGEE RQKFSEKIIV LLLTVDAIEG VDVMVRGAKR SMVDELEAML
401: DVVDPQPQGK SLSMRRRTFD MPDSLIRKEI AEGVTQIVQM LETEEE

Arabidopsis Description

BAG7BAG family molecular chaperone regulator 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.