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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • extracellular 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, extracellular, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:extracellular
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH15230 Soybean cytosol 99.53 99.53
AT5G42960.1 Thale cress cytosol 67.76 68.08
PGSC0003DMT400013168 Potato cytosol 67.29 67.92
CDY22375 Canola cytosol 66.82 67.45
Bra033653.1-P Field mustard cytosol 66.36 66.98
CDX71532 Canola cytosol 66.82 66.82
AT1G45170.1 Thale cress cytosol, plastid 66.36 66.67
Solyc04g080190.2.1 Tomato endoplasmic reticulum, nucleus 65.89 66.51
Bra035335.1-P Field mustard cytosol 64.95 65.26
CDY02425 Canola cytosol 64.95 65.26
CDY61017 Canola cytosol 64.49 64.79
VIT_18s0001g12290.t01 Wine grape cytosol 62.15 62.44
Solyc12g089100.1.1 Tomato cytosol 58.41 57.34
PGSC0003DMT400039959 Potato cytosol 57.94 56.62
GSMUA_Achr1P08310_001 Banana cytosol 54.67 55.98
GSMUA_Achr4P33140_001 Banana cytosol 55.61 55.09
Zm00001d012820_P001 Maize plastid 49.07 47.09
Os03t0855600-02 Rice plastid 49.07 46.88
Zm00001d034890_P001 Maize cytosol 47.2 45.91
EER93070 Sorghum cytosol 47.66 45.13
TraesCS5D01G564700.1 Wheat plastid 49.07 43.39
TraesCS4A01G320500.1 Wheat plastid 48.6 42.98
TraesCS5B01G558300.1 Wheat cytosol 48.13 42.56
HORVU5Hr1G124350.2 Barley nucleus 44.39 24.11
Protein Annotations
EMBL:ACUP02005673EnsemblPlants:KRH38143EnsemblPlantsGene:GLYMA_09G114000GO:GO:0003674GO:GO:0005215GO:GO:0006810
GO:GO:0008150GO:GO:0022843GO:GO:0034220GO:GO:0034765GO:GO:0098655InterPro:OEP24
PANTHER:PTHR35284PANTHER:PTHR35284:SF3ProteinID:KRH38143ProteinID:KRH38143.1UniParc:UPI0002338304UniProt:I1L2Q5
MapMan:24.4.4:::::
Description
hypothetical protein
Coordinates
chr9:+:24560691..24563317
Molecular Weight (calculated)
23727.9 Da
IEP (calculated)
9.702
GRAVY (calculated)
-0.340
Length
214 amino acids
Sequence
(BLAST)
001: MKATLKGKYD VDKNGAAFAN IAVNAGDVKF RASVTEATFI NGPSFTGLAL AVEKPGSFIV DYNVPKKDFR FQFMNTVRVG ERPLNLTYAH SRGDNRTVLD
101: GTFVYDSANK VSANYALDSG NCKLKYTYVH KGLTTFEPAY DVAKNTWDFA VSRRVYGGDD TLRASYQTSS RVLGVEWSRN PKHTAGFKIV ASVNLAEEFK
201: APKLVAETTW NFEM
Best Arabidopsis Sequence Match ( AT5G42960.1 )
(BLAST)
001: MAMKASIKGK YDTDKTSGIG SLAFNAGDIK LRATMTDATL VAGPTLTGLA LAVEKPGSFI VEYNVPKKDV RFQFMNTVRI AEKPLNLTYI HSRADNRTIV
101: DGSLVIDSAN KLSANHMVGT NNCKIKYTYA HGGLATFEPC YDLAKNTWDF AVSRRFYSGD NVRATYQTSS KLLGMEWSRN NKASGFKVCA SVNLADELKT
201: PKLTAETTWN LEM
Arabidopsis Description
OEP24BOuter envelope pore protein 24B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.