Factsheet for VIT_18s0001g12290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013168	Potato	cytosol	62.91	63.21
KRH15230	Soybean	cytosol	62.91	62.62
KRH38143	Soybean	endoplasmic reticulum	62.44	62.15
Solyc04g080190.2.1	Tomato	endoplasmic reticulum, nucleus	61.5	61.79
Bra033653.1-P	Field mustard	cytosol	59.15	59.43
CDY22375	Canola	cytosol	59.15	59.43
CDX71532	Canola	cytosol	58.69	58.41
AT1G45170.1	Thale cress	cytosol, plastid	57.28	57.28
PGSC0003DMT400039959	Potato	cytosol	58.22	56.62
Solyc12g089100.1.1	Tomato	cytosol	57.75	56.42
AT5G42960.1	Thale cress	cytosol	55.87	55.87
CDY61017	Canola	cytosol	55.87	55.87
CDY02425	Canola	cytosol	55.87	55.87
Bra035335.1-P	Field mustard	cytosol	55.87	55.87
GSMUA_Achr1P08310_001	Banana	cytosol	49.77	50.72
GSMUA_Achr4P33140_001	Banana	cytosol	50.7	50.0
Os03t0855600-02	Rice	plastid	47.89	45.54
Zm00001d012820_P001	Maize	plastid	46.95	44.84
EER93070	Sorghum	cytosol	46.01	43.36
Zm00001d034890_P001	Maize	cytosol	44.6	43.18
TraesCS4A01G320500.1	Wheat	plastid	45.54	40.08
TraesCS5D01G564700.1	Wheat	plastid	45.54	40.08
TraesCS5B01G558300.1	Wheat	cytosol	44.6	39.26
HORVU5Hr1G124350.2	Barley	nucleus	41.78	22.59

Protein Annotations

EntrezGene:100259086	wikigene:100259086	MapMan:24.4.4	ProteinID:CBI19677	ProteinID:CBI19677.3	UniProt:E0CQ31
EMBL:FN595227	GO:GO:0003674	GO:GO:0005215	GO:GO:0006810	GO:GO:0008150	GO:GO:0022843
GO:GO:0034220	GO:GO:0034765	GO:GO:0098655	EntrezGene:LOC100259086	wikigene:LOC100259086	InterPro:OEP24
PANTHER:PTHR35284	PANTHER:PTHR35284:SF3	UniParc:UPI0001985316	ArrayExpress:VIT_18s0001g12290	EnsemblPlantsGene:VIT_18s0001g12290	EnsemblPlants:VIT_18s0001g12290.t01
RefSeq:XP_002282908	RefSeq:XP_002282908.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:10490681..10500125

Molecular Weight (calculated)

23609.0 Da

IEP (calculated)

9.780

GRAVY (calculated)

-0.275

Length

213 amino acids

Sequence
(BLAST)

001: MNTSLKLSYG LEKNNAAAFA TVAAKAGDVK FKASMTDATF VNGPSLTGLA LAVEKPGSFV IDFDVPKKDF KFRFMNTINV AGKPLNLTYM HNRGENRTTL
101: DGALVVDSAN KVSGSYMFGT KDNFKLKYTY VHGGTTTFEP CFDFAGKSWD FMLSRKVYGD DVVRATYKTS NRVIGLDWSR NSKQSFKISA IIDLNEESKV
201: PKLFAESTWT FES

Best Arabidopsis Sequence Match ( AT5G42960.1 )
(BLAST)

001: MAMKASIKGK YDTDKTSGIG SLAFNAGDIK LRATMTDATL VAGPTLTGLA LAVEKPGSFI VEYNVPKKDV RFQFMNTVRI AEKPLNLTYI HSRADNRTIV
101: DGSLVIDSAN KLSANHMVGT NNCKIKYTYA HGGLATFEPC YDLAKNTWDF AVSRRFYSGD NVRATYQTSS KLLGMEWSRN NKASGFKVCA SVNLADELKT
201: PKLTAETTWN LEM

Arabidopsis Description

OEP24BOuter envelope pore protein 24B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.