Factsheet for Zm00001d012820_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034890_P001	Maize	cytosol	90.13	91.36
Os03t0855600-02	Rice	plastid	77.13	76.79
TraesCS4A01G320500.1	Wheat	plastid	81.17	74.79
TraesCS5D01G564700.1	Wheat	plastid	80.72	74.38
TraesCS5B01G558300.1	Wheat	cytosol	79.82	73.55
GSMUA_Achr1P08310_001	Banana	cytosol	57.4	61.24
GSMUA_Achr4P33140_001	Banana	cytosol	55.16	56.94
Solyc04g080190.2.1	Tomato	endoplasmic reticulum, nucleus	50.22	52.83
PGSC0003DMT400013168	Potato	cytosol	49.78	52.36
CDX71532	Canola	cytosol	48.88	50.93
CDY02425	Canola	cytosol	48.43	50.7
Bra035335.1-P	Field mustard	cytosol	48.43	50.7
CDY22375	Canola	cytosol	47.98	50.47
Bra033653.1-P	Field mustard	cytosol	47.98	50.47
CDY61017	Canola	cytosol	47.98	50.23
KRH15230	Soybean	cytosol	47.53	49.53
KRH38143	Soybean	endoplasmic reticulum	47.09	49.07
AT5G42960.1	Thale cress	cytosol	46.64	48.83
AT1G45170.1	Thale cress	cytosol, plastid	44.84	46.95
VIT_18s0001g12290.t01	Wine grape	cytosol	44.84	46.95
Solyc12g089100.1.1	Tomato	cytosol	45.74	46.79
PGSC0003DMT400039959	Potato	cytosol	45.29	46.12
PGSC0003DMT400033045	Potato	cytosol	37.22	41.71
HORVU5Hr1G124350.2	Barley	nucleus	73.54	41.62

Protein Annotations

EMBL:AY821915	EMBL:BT061711	EnsemblPlants:Zm00001d012820_P001	EnsemblPlants:Zm00001d012820_T001	EnsemblPlantsGene:Zm00001d012820	GO:GO:0003674
GO:GO:0005215	GO:GO:0006810	GO:GO:0008150	GO:GO:0022843	GO:GO:0034220	GO:GO:0034765
GO:GO:0098655	InterPro:OEP24	PANTHER:PTHR35284	PANTHER:PTHR35284:SF1	ProteinID:AQK61502.1	SEG:seg
UniParc:UPI00004B5221	UniProt:Q5IBC6	MapMan:24.4.4	:	:	:

Description

Outer envelope pore protein 24A chloroplastic

Coordinates

chr5:-:848901..851867

Molecular Weight (calculated)

23867.2 Da

IEP (calculated)

9.568

GRAVY (calculated)

-0.220

Length

223 amino acids

Sequence
(BLAST)

001: MKATLKGRYE GDKATAATTL AAPAGDLRLK ASATEAAFTN GPSLRGLTLT LEKPGAFLVD LKPHNQDVRF QFMNSALVLD KRVSLTYTHS TSLAAAPAAA
101: PPSRTALDCT VTFDPANKVS LSHSLGSGGC RLKYTYAHGV DRLTTIEPLF DTNKNAWEFA ITRKFAGGDA VKGTYQASTK LLGLEWSRDS LAGGSFKVAT
201: TFDLSDQSKA PKLIAESTWN YEI

Best Arabidopsis Sequence Match ( AT5G42960.1 )
(BLAST)

001: MAMKASIKGK YDTDKTSGIG SLAFNAGDIK LRATMTDATL VAGPTLTGLA LAVEKPGSFI VEYNVPKKDV RFQFMNTVRI AEKPLNLTYI HSRADNRTIV
101: DGSLVIDSAN KLSANHMVGT NNCKIKYTYA HGGLATFEPC YDLAKNTWDF AVSRRFYSGD NVRATYQTSS KLLGMEWSRN NKASGFKVCA SVNLADELKT
201: PKLTAETTWN LEM

Arabidopsis Description

OEP24BOuter envelope pore protein 24B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.