Factsheet for PGSC0003DMT400039959

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089100.1.1	Tomato	cytosol	93.15	93.58
PGSC0003DMT400013168	Potato	cytosol	68.49	70.75
AT1G45170.1	Thale cress	cytosol, plastid	57.99	59.62
Bra035335.1-P	Field mustard	cytosol	57.08	58.69
CDY02425	Canola	cytosol	57.08	58.69
KRH15230	Soybean	cytosol	57.08	58.41
CDY61017	Canola	cytosol	56.62	58.22
VIT_18s0001g12290.t01	Wine grape	cytosol	56.62	58.22
Bra033653.1-P	Field mustard	cytosol	56.16	58.02
CDY22375	Canola	cytosol	56.16	58.02
CDX71532	Canola	cytosol	56.62	57.94
KRH38143	Soybean	endoplasmic reticulum	56.62	57.94
AT5G42960.1	Thale cress	cytosol	55.25	56.81
GSMUA_Achr1P08310_001	Banana	cytosol	47.95	50.24
GSMUA_Achr4P33140_001	Banana	cytosol	48.4	49.07
PGSC0003DMT400033045	Potato	cytosol	44.29	48.74
Os03t0855600-02	Rice	plastid	48.4	47.32
Zm00001d034890_P001	Maize	cytosol	45.66	45.45
Zm00001d012820_P001	Maize	plastid	46.12	45.29
TraesCS4A01G320500.1	Wheat	plastid	47.03	42.56
TraesCS5D01G564700.1	Wheat	plastid	47.03	42.56
EER93070	Sorghum	cytosol	43.84	42.48
TraesCS5B01G558300.1	Wheat	cytosol	46.12	41.74
HORVU5Hr1G124350.2	Barley	nucleus	45.21	25.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400039959	EnsemblPlantsGene:PGSC0003DMG401015455	EntrezGene:102595398	GO:GO:0003674	GO:GO:0005215	GO:GO:0006810
GO:GO:0008150	GO:GO:0022843	GO:GO:0034220	GO:GO:0034765	GO:GO:0098655	InterPro:OEP24
PANTHER:PTHR35284	PANTHER:PTHR35284:SF1	PGSC:PGSC0003DMG401015455	RefSeq:XP_006342591.1	SEG:seg	UniParc:UPI0002952AC2
UniProt:M1B919	MapMan:24.4.4	:	:	:	:

Description

Pore protein of 24 kD (OEP24) [Source:PGSC_GENE;Acc:PGSC0003DMG401015455]

Coordinates

chr12:-:56831985..56835099

Molecular Weight (calculated)

24101.4 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.361

Length

219 amino acids

Sequence
(BLAST)

001: MLKTSVKARY ETEAEKEAAT GGATVTFNAG NFKLRASMTD ATVINGPSLN GLSLAVEKPD SFIFDYNVPK NDFKFQFMNS ISVLEKPLNL KYIHSRGEDK
101: TTLDGTLVFD SANKLSVSHK LGSGGCKLKY SYVHGGLTTF EPSYDIKEDS WDFAVSHKVY GNDVCKATYQ TPSRNLGLHW SRSSKLGGSL KVSASVCLDD
201: DELIKLPKLT AETSWDFDL

Best Arabidopsis Sequence Match ( AT1G45170.1 )
(BLAST)

001: MMKASFKGKF DVDKSGSVAS LTFNAGNAKL RATMTDASFV AGPSFNGLSL AVEKPGFFII DYNVPKKDVR FQFMNTIRIA EKPLNLTYIH MRGDNRTIVD
101: GSFVIDPANK LSANYMVGTK NCKLKYTYVH GGIATFEPCY DVAKNMWDFA ISHKLYGGDN LKATYQTSSK MLGLEWSNNS KSTGSFKVCA SMNLAEELKP
201: PKLTAETTWN LEL

Arabidopsis Description

OEP24AOuter envelope pore protein 24A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5C9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.