Factsheet for PGSC0003DMT400013168

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
peroxisome 1
plastid 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080190.2.1	Tomato	endoplasmic reticulum, nucleus	98.58	98.58
PGSC0003DMT400039959	Potato	cytosol	70.75	68.49
KRH15230	Soybean	cytosol	68.4	67.76
KRH38143	Soybean	endoplasmic reticulum	67.92	67.29
Bra035335.1-P	Field mustard	cytosol	67.45	67.14
CDY02425	Canola	cytosol	67.45	67.14
CDY61017	Canola	cytosol	67.45	67.14
Bra033653.1-P	Field mustard	cytosol	66.51	66.51
CDY22375	Canola	cytosol	66.51	66.51
CDX71532	Canola	cytosol	66.98	66.36
AT1G45170.1	Thale cress	cytosol, plastid	65.57	65.26
AT5G42960.1	Thale cress	cytosol	65.09	64.79
VIT_18s0001g12290.t01	Wine grape	cytosol	63.21	62.91
GSMUA_Achr1P08310_001	Banana	cytosol	56.13	56.94
GSMUA_Achr4P33140_001	Banana	cytosol	56.6	55.56
Zm00001d012820_P001	Maize	plastid	52.36	49.78
Os03t0855600-02	Rice	plastid	51.89	49.11
Zm00001d034890_P001	Maize	cytosol	50.94	49.09
PGSC0003DMT400033045	Potato	cytosol	45.28	48.24
TraesCS4A01G320500.1	Wheat	plastid	53.77	47.11
TraesCS5D01G564700.1	Wheat	plastid	53.77	47.11
EER93070	Sorghum	cytosol	49.53	46.46
TraesCS5B01G558300.1	Wheat	cytosol	52.83	46.28
HORVU5Hr1G124350.2	Barley	nucleus	52.83	28.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400013168	EnsemblPlantsGene:PGSC0003DMG400005143	EntrezGene:102584345	GO:GO:0003674	GO:GO:0005215	GO:GO:0006810
GO:GO:0008150	GO:GO:0022843	GO:GO:0034220	GO:GO:0034765	GO:GO:0098655	InterPro:OEP24
PANTHER:PTHR35284	PANTHER:PTHR35284:SF1	PGSC:PGSC0003DMG400005143	RefSeq:XP_006341920.1	SEG:seg	UniParc:UPI000294A6BE
UniProt:M1A2E9	MapMan:24.4.4	:	:	:	:

Description

Pore protein of 24 kD (OEP24) [Source:PGSC_GENE;Acc:PGSC0003DMG400005143]

Coordinates

chr4:-:69588343..69592062

Molecular Weight (calculated)

23579.4 Da

IEP (calculated)

9.629

GRAVY (calculated)

-0.210

Length

212 amino acids

Sequence
(BLAST)

001: MKASFKARYE PDKAAAAATV AFNAGDLKLR ASMTDATVVK GPSLNGLALA VEKPGLFIVD YNVPKKDIRF QFMNSIKVLE KPLNLNYIHF HGDKRTILDG
101: TLVVDSANKV SANHVMGSGS CKLKYTYVHG GITTFEPIYD TAKNAWDFMV SRKVYGDDVF RATYQTTSRN LGLEWSRSSK LNGSFKICAS LCLLEERKIP
201: KLSAETSWDF EM

Best Arabidopsis Sequence Match ( AT1G45170.1 )
(BLAST)

001: MMKASFKGKF DVDKSGSVAS LTFNAGNAKL RATMTDASFV AGPSFNGLSL AVEKPGFFII DYNVPKKDVR FQFMNTIRIA EKPLNLTYIH MRGDNRTIVD
101: GSFVIDPANK LSANYMVGTK NCKLKYTYVH GGIATFEPCY DVAKNMWDFA ISHKLYGGDN LKATYQTSSK MLGLEWSNNS KSTGSFKVCA SMNLAEELKP
201: PKLTAETTWN LEL

Arabidopsis Description

OEP24AOuter envelope pore protein 24A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5C9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.