Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02425 | Canola | cytosol | 99.53 | 99.53 |
| CDY61017 | Canola | cytosol | 99.06 | 99.06 |
| Bra033653.1-P | Field mustard | cytosol | 90.14 | 90.57 |
| AT5G42960.1 | Thale cress | cytosol | 85.45 | 85.45 |
| Solyc04g080190.2.1 | Tomato | endoplasmic reticulum, nucleus | 68.08 | 68.4 |
| PGSC0003DMT400013168 | Potato | cytosol | 67.14 | 67.45 |
| KRH15230 | Soybean | cytosol | 65.73 | 65.42 |
| KRH38143 | Soybean | endoplasmic reticulum | 65.26 | 64.95 |
| GSMUA_Achr1P08310_001 | Banana | cytosol | 56.81 | 57.89 |
| GSMUA_Achr4P33140_001 | Banana | cytosol | 58.69 | 57.87 |
| PGSC0003DMT400039959 | Potato | cytosol | 58.69 | 57.08 |
| Solyc12g089100.1.1 | Tomato | cytosol | 58.22 | 56.88 |
| VIT_18s0001g12290.t01 | Wine grape | cytosol | 55.87 | 55.87 |
| Os03t0855600-02 | Rice | plastid | 52.58 | 50.0 |
| Zm00001d012820_P001 | Maize | plastid | 50.7 | 48.43 |
| Zm00001d034890_P001 | Maize | cytosol | 49.3 | 47.73 |
| TraesCS4A01G320500.1 | Wheat | plastid | 52.58 | 46.28 |
| EER93070 | Sorghum | cytosol | 48.83 | 46.02 |
| TraesCS5D01G564700.1 | Wheat | plastid | 51.64 | 45.45 |
| TraesCS5B01G558300.1 | Wheat | cytosol | 51.17 | 45.04 |
| HORVU5Hr1G124350.2 | Barley | nucleus | 48.83 | 26.4 |
Protein Annotations
| EnsemblPlants:Bra035335.1 | EnsemblPlants:Bra035335.1-P | EnsemblPlantsGene:Bra035335 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0022843 | GO:GO:0034220 | GO:GO:0034765 | GO:GO:0098655 | InterPro:OEP24 |
| PANTHER:PTHR35284 | PANTHER:PTHR35284:SF1 | UniParc:UPI000253E5FC | UniProt:M4F2N6 | MapMan:24.4.4 | : |
Description
AT5G42960 (E=2e-104) | unknown protein
Coordinates
chrScaffold000103:-:713654..714586
Molecular Weight (calculated)
23515.2 Da
IEP (calculated)
9.629
GRAVY (calculated)
-0.264
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKASVKGKY DGDKSTGVGS LAFNAGDLKL RATMTDATLV AGPTLNGLSL AVEKPGFFIV EYNVPKKDVR FQFMNTVRIA EKPLNLTYIH SRADNRTIVD
101: GSLLIDPSNK LSVNHMVGTN NCKLKYTYAH GKIATFEPCY DFAKNAWDFA VSRRVYGDDV VKATYQTSSK LLGMEWSRTS KSTGSFKVCA SVNLAEEVKT
201: PKLTAETTWN LEM
101: GSLLIDPSNK LSVNHMVGTN NCKLKYTYAH GKIATFEPCY DFAKNAWDFA VSRRVYGDDV VKATYQTSSK LLGMEWSRTS KSTGSFKVCA SVNLAEEVKT
201: PKLTAETTWN LEM
001: MAMKASIKGK YDTDKTSGIG SLAFNAGDIK LRATMTDATL VAGPTLTGLA LAVEKPGSFI VEYNVPKKDV RFQFMNTVRI AEKPLNLTYI HSRADNRTIV
101: DGSLVIDSAN KLSANHMVGT NNCKIKYTYA HGGLATFEPC YDLAKNTWDF AVSRRFYSGD NVRATYQTSS KLLGMEWSRN NKASGFKVCA SVNLADELKT
201: PKLTAETTWN LEM
101: DGSLVIDSAN KLSANHMVGT NNCKIKYTYA HGGLATFEPC YDLAKNTWDF AVSRRFYSGD NVRATYQTSS KLLGMEWSRN NKASGFKVCA SVNLADELKT
201: PKLTAETTWN LEM
Arabidopsis Description
OEP24BOuter envelope pore protein 24B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.