Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039959 | Potato | cytosol | 93.58 | 93.15 |
| Solyc04g080190.2.1 | Tomato | endoplasmic reticulum, nucleus | 69.27 | 71.23 |
| AT1G45170.1 | Thale cress | cytosol, plastid | 58.26 | 59.62 |
| KRH15230 | Soybean | cytosol | 57.8 | 58.88 |
| KRH38143 | Soybean | endoplasmic reticulum | 57.34 | 58.41 |
| Bra035335.1-P | Field mustard | cytosol | 56.88 | 58.22 |
| CDY02425 | Canola | cytosol | 56.88 | 58.22 |
| VIT_18s0001g12290.t01 | Wine grape | cytosol | 56.42 | 57.75 |
| CDY61017 | Canola | cytosol | 56.42 | 57.75 |
| Bra033653.1-P | Field mustard | cytosol | 55.96 | 57.55 |
| CDY22375 | Canola | cytosol | 55.96 | 57.55 |
| CDX71532 | Canola | cytosol | 56.42 | 57.48 |
| AT5G42960.1 | Thale cress | cytosol | 55.96 | 57.28 |
| GSMUA_Achr1P08310_001 | Banana | cytosol | 48.62 | 50.72 |
| GSMUA_Achr4P33140_001 | Banana | cytosol | 48.62 | 49.07 |
| Os03t0855600-02 | Rice | plastid | 49.08 | 47.77 |
| Zm00001d012820_P001 | Maize | plastid | 46.79 | 45.74 |
| Zm00001d034890_P001 | Maize | cytosol | 45.41 | 45.0 |
| TraesCS5D01G564700.1 | Wheat | plastid | 47.71 | 42.98 |
| TraesCS4A01G320500.1 | Wheat | plastid | 47.71 | 42.98 |
| EER93070 | Sorghum | cytosol | 44.5 | 42.92 |
| TraesCS5B01G558300.1 | Wheat | cytosol | 46.79 | 42.15 |
| HORVU5Hr1G124350.2 | Barley | nucleus | 45.87 | 25.38 |
Protein Annotations
| EMBL:GQ261250 | EnsemblPlants:Solyc12g089100.1.1 | EnsemblPlantsGene:Solyc12g089100.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0022843 | GO:GO:0034220 | GO:GO:0034765 | GO:GO:0098655 | InterPro:OEP24 |
| PANTHER:PTHR35284 | PANTHER:PTHR35284:SF1 | SEG:seg | UniParc:UPI000243C647 | UniProt:G8Z272 | MapMan:24.4.4 |
Description
Hop-interacting protein THI045 [Source:UniProtKB/TrEMBL;Acc:G8Z272]
Coordinates
chr12:-:64222413..64225230
Molecular Weight (calculated)
24035.2 Da
IEP (calculated)
6.675
GRAVY (calculated)
-0.415
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKASVNARY ETEAEKEAAT GGATVTFNAG DFKLRASMTD ATVINGPSLN GLSLAVEKPN SFIFDYNVPK NDIKFQFMNS INVLEKPLNL KYTHSRGEDK
101: TTLDGTLVFD SANKLSVSHK LSSGGCKLKY SYVHGGLTTF EPSYDIKEDS WDFAVSHKVY GNDVCKATYQ TPSRNLGLHW SRSTKLGGSF KVSASMCLDD
201: DELKLPKLTA ETSWDFDL
101: TTLDGTLVFD SANKLSVSHK LSSGGCKLKY SYVHGGLTTF EPSYDIKEDS WDFAVSHKVY GNDVCKATYQ TPSRNLGLHW SRSTKLGGSF KVSASMCLDD
201: DELKLPKLTA ETSWDFDL
001: MMKASFKGKF DVDKSGSVAS LTFNAGNAKL RATMTDASFV AGPSFNGLSL AVEKPGFFII DYNVPKKDVR FQFMNTIRIA EKPLNLTYIH MRGDNRTIVD
101: GSFVIDPANK LSANYMVGTK NCKLKYTYVH GGIATFEPCY DVAKNMWDFA ISHKLYGGDN LKATYQTSSK MLGLEWSNNS KSTGSFKVCA SMNLAEELKP
201: PKLTAETTWN LEL
101: GSFVIDPANK LSANYMVGTK NCKLKYTYVH GGIATFEPCY DVAKNMWDFA ISHKLYGGDN LKATYQTSSK MLGLEWSNNS KSTGSFKVCA SMNLAEELKP
201: PKLTAETTWN LEL
Arabidopsis Description
OEP24AOuter envelope pore protein 24A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5C9]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.