Factsheet for TraesCS5D01G564700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 16595579
plastid: 18419817
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G320500.1	Wheat	plastid	98.76	98.76
TraesCS5B01G558300.1	Wheat	cytosol	98.76	98.76
Zm00001d012820_P001	Maize	plastid	74.38	80.72
EER93070	Sorghum	cytosol	73.97	79.2
Zm00001d034890_P001	Maize	cytosol	71.49	78.64
Os03t0855600-02	Rice	plastid	69.83	75.45
GSMUA_Achr1P08310_001	Banana	cytosol	53.72	62.2
GSMUA_Achr4P33140_001	Banana	cytosol	51.65	57.87
HORVU5Hr1G124350.2	Barley	nucleus	88.84	54.57
PGSC0003DMT400013168	Potato	cytosol	47.11	53.77
Solyc04g080190.2.1	Tomato	endoplasmic reticulum, nucleus	46.69	53.3
CDX71532	Canola	cytosol	46.28	52.34
CDY02425	Canola	cytosol	45.45	51.64
Bra035335.1-P	Field mustard	cytosol	45.45	51.64
CDY22375	Canola	cytosol	45.04	51.42
Bra033653.1-P	Field mustard	cytosol	45.04	51.42
CDY61017	Canola	cytosol	45.04	51.17
AT5G42960.1	Thale cress	cytosol	44.21	50.23
KRH15230	Soybean	cytosol	43.8	49.53
KRH38143	Soybean	endoplasmic reticulum	43.39	49.07
Solyc12g089100.1.1	Tomato	cytosol	42.98	47.71
AT1G45170.1	Thale cress	cytosol, plastid	41.74	47.42
PGSC0003DMT400039959	Potato	cytosol	42.56	47.03
VIT_18s0001g12290.t01	Wine grape	cytosol	40.08	45.54
PGSC0003DMT400033045	Potato	cytosol	33.47	40.7

Protein Annotations

EnsemblPlants:TraesCS5D01G564700.1	EnsemblPlantsGene:TraesCS5D01G564700	GO:GO:0003674	GO:GO:0005215	GO:GO:0006810	GO:GO:0008150
GO:GO:0022843	GO:GO:0034765	InterPro:OEP24	PANTHER:PTHR35284	PANTHER:PTHR35284:SF1	SEG:seg
MapMan:24.4.4	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:563602438..563606639

Molecular Weight (calculated)

25291.9 Da

IEP (calculated)

9.855

GRAVY (calculated)

-0.196

Length

242 amino acids

Sequence
(BLAST)

001: MKATVKGRYE GDKATAAATV ALAAAGDLRL RASATDAAFA AGPSLDGLTL TLEKPGAFLL DLKPHNQDVR FQFMNSATVL DKRVSLTYTH STSLAPAAPK
101: PAIPAPAAGA APAPPPRGPP PGRTALDLSI AFDPANKVSV SHALGGGGCR VKYTYAHGAG RLTTIEPVYD TAKNAWEFAV ARKFDAGDTV RGTYQASTKQ
201: LGLEWTRSSS IGGSFKVATT FDLSDQSKAP KLVAESTWNY EI

Best Arabidopsis Sequence Match ( AT5G42960.1 )
(BLAST)

001: MAMKASIKGK YDTDKTSGIG SLAFNAGDIK LRATMTDATL VAGPTLTGLA LAVEKPGSFI VEYNVPKKDV RFQFMNTVRI AEKPLNLTYI HSRADNRTIV
101: DGSLVIDSAN KLSANHMVGT NNCKIKYTYA HGGLATFEPC YDLAKNTWDF AVSRRFYSGD NVRATYQTSS KLLGMEWSRN NKASGFKVCA SVNLADELKT
201: PKLTAETTWN LEM

Arabidopsis Description

OEP24BOuter envelope pore protein 24B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.